Assay name
HS_PHGDH_1738589 QuantiNova LNA PCR Assay
Assay specification
Best coverage assay for PHGDH
Assay targets 26 transcripts
Assay spans exon
Pre-designed assay for dPCR and qPCR.
Assay in Focus Panel
Assay targets 26 transcripts
Assay spans exon
Pre-designed assay for dPCR and qPCR.
Assay in Focus Panel
Gene symbol
PHGDH
Gene aliases
SERA;PGDH;PDG
Species
Homo sapiens
Main target
ENST00000369407
Exons numbers
1-2
Ensembl exons ids
ENSE00001818065;ENSE00003570412
Amplicon start
1641
Amplicon length
109
Assay targets
Transcript Ensembl Id
Bio Type
Ccds
Ref Seq
Chromosome Location
ENST00000369407
Retained intron
Chr.1: 119719627 - 119744213
ENST00000369409
Protein coding
Chr.1: 119711934 - 119744212
ENST00000462324
Processed transcript
Chr.1: 119711940 - 119734682
ENST00000493622
Protein coding
Chr.1: 119659798 - 119734676
ENST00000496756
Retained intron
Chr.1: 119711887 - 119723457
ENST00000641023
Protein coding
CCDS904
NM_006623
Chr.1: 119711715 - 119744226
ENST00000641074
Protein coding
Chr.1: 119711886 - 119744212
ENST00000641115
Protein coding
Chr.1: 119711898 - 119744215
ENST00000641213
Nonsense mediated decay
Chr.1: 119711884 - 119744201
ENST00000641247
Nonsense mediated decay
Chr.1: 119711996 - 119735321
ENST00000641314
Processed transcript
Chr.1: 119715795 - 119744011
ENST00000641371
Nonsense mediated decay
Chr.1: 119711940 - 119735379
ENST00000641375
Nonsense mediated decay
Chr.1: 119711936 - 119744213
ENST00000641491
Nonsense mediated decay
Chr.1: 119711906 - 119734716
ENST00000641513
Nonsense mediated decay
Chr.1: 119711935 - 119726899
ENST00000641570
Nonsense mediated decay
Chr.1: 119711936 - 119734981
ENST00000641573
Retained intron
Chr.1: 119711935 - 119727684
ENST00000641587
Nonsense mediated decay
Chr.1: 119711936 - 119734699
ENST00000641597
Protein coding
CCDS904
Chr.1: 119648411 - 119744190
ENST00000641711
Processed transcript
Chr.1: 119713099 - 119727080
ENST00000641891
Nonsense mediated decay
Chr.1: 119711936 - 119744202
ENST00000641927
Processed transcript
Chr.1: 119714411 - 119744176
ENST00000641947
Protein coding
Chr.1: 119711884 - 119744094
ENST00000642021
Retained intron
Chr.1: 119711901 - 119744201
ENST00000642041
Nonsense mediated decay
Chr.1: 119711884 - 119727063