Assay name
HS_HDAC7_1315511 QuantiNova LNA PCR Assay
Wet-lab validated
qPCR wet-lab validated
Assay specification
Best coverage assay for HDAC7
Best transcript assay for ENST00000354334
Assay targets 10 transcripts
Assay spans exon
Pre-designed assay for dPCR and qPCR. Wet-lab validated for qPCR.
Assay in Focus Panel
Best transcript assay for ENST00000354334
Assay targets 10 transcripts
Assay spans exon
Pre-designed assay for dPCR and qPCR. Wet-lab validated for qPCR.
Assay in Focus Panel
Gene symbol
HDAC7
Gene aliases
DKFZP586J0917;HDAC7A
Species
Homo sapiens
Main target
ENST00000354334
Exons numbers
18-19
Ensembl exons ids
ENSE00003626481;ENSE00003690258
Amplicon start
2177
Amplicon length
73
Assay targets
Transcript Ensembl Id
Bio Type
Ccds
Ref Seq
Chromosome Location
ENST00000080059
Protein coding
CCDS8756
NM_015401
Chr.12: 47782722 - 47819903
ENST00000354334
Protein coding
CCDS41776
NM_001098416
Chr.12: 47782722 - 47819866
ENST00000380610
Protein coding
Chr.12: 47783721 - 47802512
ENST00000427332
Protein coding
Chr.12: 47783841 - 47820612
ENST00000459625
Retained intron
Chr.12: 47782726 - 47793498
ENST00000470668
Retained intron
Chr.12: 47782726 - 47798189
ENST00000477203
Nonsense mediated decay
Chr.12: 47783674 - 47799140
ENST00000488927
Nonsense mediated decay
Chr.12: 47788096 - 47792000
ENST00000548938
Nonsense mediated decay
Chr.12: 47782726 - 47793542
ENST00000552960
Protein coding
CCDS81685
NM_001308090
Chr.12: 47783651 - 47819886