Assay name
HS_NSD1_1583274 QuantiNova LNA PCR Assay
Wet-lab validated
qPCR wet-lab validated
Assay specification
Best coverage assay for NSD1
Best transcript assay for ENST00000439151
Assay targets 7 transcripts
Assay spans exon
Pre-designed assay for dPCR and qPCR. Wet-lab validated for qPCR.
Assay in Focus Panel
Best transcript assay for ENST00000439151
Assay targets 7 transcripts
Assay spans exon
Pre-designed assay for dPCR and qPCR. Wet-lab validated for qPCR.
Assay in Focus Panel
Gene symbol
NSD1
Gene aliases
ARA267;FLJ22263;KMT3B;STO
Species
Homo sapiens
Main target
ENST00000439151
Exons numbers
2-3
Ensembl exons ids
ENSE00001378782;ENSE00001547915
Amplicon start
882
Amplicon length
127
Assay targets
Transcript Ensembl Id
Bio Type
Ccds
Ref Seq
Chromosome Location
ENST00000347982
Protein coding
CCDS4413
Chr.5: 177134229 - 177295762
ENST00000354179
Protein coding
CCDS4413
NM_001365684;NM_172349
Chr.5: 177133079 - 177300210
ENST00000439151
Protein coding
CCDS4412
NM_022455
Chr.5: 177133925 - 177300215
ENST00000508896
Protein coding
Chr.5: 177133600 - 177209672
ENST00000510954
Protein coding
Chr.5: 177133079 - 177204236
ENST00000638627
Nonsense mediated decay
Chr.5: 177135167 - 177210453
ENST00000644863
Nonsense mediated decay
Chr.5: 177135167 - 177210068