Assay name​
HS_RBM39_1341372 QuantiNova LNA PCR Assay
Assay specification​
Best coverage assay for RBM39
Assay targets 21 transcripts
Assay spans exon
Pre-designed assay for dPCR and qPCR.
Assay in Focus Panel
Assay targets 21 transcripts
Assay spans exon
Pre-designed assay for dPCR and qPCR.
Assay in Focus Panel
Gene symbol​
RBM39
Gene aliases​
CC1.3;HCC1;CAPER;fSAP59;CAPERalpha;RNPC2
Species​
Homo sapiens
Main target​
ENST00000477334
Exons numbers​
1-2
Ensembl exons ids​
ENSE00003536038;ENSE00001888767
Amplicon start​
126
Amplicon length​
131
Assay targets​
Transcript Ensembl Id
Bio Type
Ccds
Ref Seq
Chromosome Location
ENST00000253363
Protein coding
CCDS13266
NM_001323424;NM_184234
Chr.20: 35703610 - 35741951
ENST00000338163
Nonsense mediated decay
Chr.20: 35703611 - 35742221
ENST00000361162
Protein coding
CCDS13265
NM_001323422;NM_004902
Chr.20: 35703610 - 35742312
ENST00000374038
Protein coding
Chr.20: 35721867 - 35742258
ENST00000403542
Nonsense mediated decay
Chr.20: 35703611 - 35742274
ENST00000412738
Nonsense mediated decay
Chr.20: 35724570 - 35742113
ENST00000425184
Nonsense mediated decay
Chr.20: 35725065 - 35740597
ENST00000426951
Protein coding
Chr.20: 35731360 - 35740837
ENST00000429968
Nonsense mediated decay
Chr.20: 35704326 - 35742256
ENST00000433027
Nonsense mediated decay
Chr.20: 35732045 - 35742219
ENST00000434927
Protein coding
Chr.20: 35724676 - 35741609
ENST00000442447
Processed transcript
Chr.20: 35731916 - 35742178
ENST00000444878
Nonsense mediated decay
Chr.20: 35704326 - 35742248
ENST00000449489
Nonsense mediated decay
Chr.20: 35731946 - 35740887
ENST00000455343
Nonsense mediated decay
Chr.20: 35729322 - 35741958
ENST00000461283
Retained intron
Chr.20: 35703610 - 35739037
ENST00000463004
Retained intron
Chr.20: 35703609 - 35742236
ENST00000477334
Retained intron
Chr.20: 35731360 - 35739140
ENST00000481037
Retained intron
Chr.20: 35725124 - 35739283
ENST00000528062
Protein coding
CCDS56186
NM_001242600;NM_001242599;NM_001323423
Chr.20: 35703898 - 35742238