Assay name​
HS_CHD9_1516161 QuantiNova LNA PCR Assay
Assay specification​
Best coverage assay for CHD9
Assay targets 10 transcripts
Assay spans exon
Pre-designed assay for dPCR and qPCR.
Assay in Focus Panel
Assay targets 10 transcripts
Assay spans exon
Pre-designed assay for dPCR and qPCR.
Assay in Focus Panel
Gene symbol​
CHD9
Gene aliases​
FLJ12178;KIAA0308;BC022889
Species​
Homo sapiens
Main target​
ENST00000565119
Exons numbers​
1-2
Ensembl exons ids​
ENSE00002580890;ENSE00003536204
Amplicon start​
83
Amplicon length​
122
Assay targets​
Transcript Ensembl Id
Bio Type
Ccds
Ref Seq
Chromosome Location
ENST00000219084
Retained intron
Chr.16: 53235137 - 53327451
ENST00000398510
Protein coding
CCDS76865
NM_001308319
Chr.16: 53156003 - 53327451
ENST00000447540
Protein coding
CCDS76865
Chr.16: 53055033 - 53327501
ENST00000564255
Retained intron
Chr.16: 53157164 - 53250175
ENST00000564845
Protein coding
CCDS45485
NM_001352127;NM_001352158
Chr.16: 53130921 - 53327451
ENST00000565119
Processed transcript
Chr.16: 53245733 - 53250649
ENST00000565803
Protein coding
NM_001352156;NM_001352157
Chr.16: 53207989 - 53326856
ENST00000566029
Protein coding
CCDS45485
NM_025134
Chr.16: 53055033 - 53329150
ENST00000569225
Retained intron
Chr.16: 53235137 - 53248163
ENST00000615216
Protein coding
Chr.16: 53055033 - 53327501