Assay name
HS_COL9A1_1555560 QuantiNova LNA PCR Assay
Assay specification
Best coverage assay for COL9A1
Best transcript assay for ENST00000447041
Assay targets 8 transcripts
Assay spans exon
Pre-designed assay for dPCR and qPCR.
Assay in Focus Panel
Best transcript assay for ENST00000447041
Assay targets 8 transcripts
Assay spans exon
Pre-designed assay for dPCR and qPCR.
Assay in Focus Panel
Gene symbol
COL9A1
Species
Homo sapiens
Main target
ENST00000447041
Exons numbers
10-12
Ensembl exons ids
ENSE00002285108;ENSE00003480217;ENSE00003515813
Amplicon start
438
Amplicon length
85
Assay targets
Transcript Ensembl Id
Bio Type
Ccds
Ref Seq
Chromosome Location
ENST00000320755
Protein coding
CCDS47447
NM_078485
Chr.6: 70216040 - 70283209
ENST00000357250
Protein coding
CCDS4971
NM_001851
Chr.6: 70215061 - 70303083
ENST00000360859
Processed transcript
Chr.6: 70216257 - 70258682
ENST00000447041
Processed transcript
Chr.6: 70234560 - 70254758
ENST00000486080
Processed transcript
Chr.6: 70216524 - 70246303
ENST00000489611
Processed transcript
Chr.6: 70216743 - 70280477
ENST00000493682
Retained intron
Chr.6: 70234909 - 70261078
ENST00000644493
Nonsense mediated decay
Chr.6: 70216684 - 70283245