Assay name
HS_SCN5A_1747485 QuantiNova LNA PCR Assay
Assay specification
Best coverage assay for SCN5A
Assay targets 11 transcripts
Assay spans exon
Pre-designed assay for dPCR and qPCR.
Assay targets 11 transcripts
Assay spans exon
Pre-designed assay for dPCR and qPCR.
Gene symbol
SCN5A
Gene aliases
Nav1.5;LQT3;HB1;HBBD;PFHB1;IVF;HB2;HH1;SSS1;CDCD2;CMPD2;ICCD;CMD1E
Species
Homo sapiens
Main target
ENST00000612060
Exons numbers
2-4
Ensembl exons ids
ENSE00003464330;ENSE00003752519;ENSE00003722935
Amplicon start
416
Amplicon length
120
Assay targets
Transcript Ensembl Id
Bio Type
Ccds
Ref Seq
Chromosome Location
ENST00000333535
Protein coding
CCDS46796
NM_198056
Chr.3: 38548066 - 38649628
ENST00000413689
Protein coding
CCDS46799
NM_001099404
Chr.3: 38548062 - 38649672
ENST00000414099
Protein coding
CCDS46798
Chr.3: 38548057 - 38633349
ENST00000423572
Protein coding
CCDS46797
NM_000335
Chr.3: 38548062 - 38633362
ENST00000425664
Protein coding
CCDS46798
NM_001354701;NM_001099405
Chr.3: 38548062 - 38649672
ENST00000449557
Protein coding
Chr.3: 38550321 - 38633316
ENST00000450102
Protein coding
CCDS54569
Chr.3: 38549968 - 38633349
ENST00000451551
Protein coding
CCDS54569
NM_001160161
Chr.3: 38548062 - 38649673
ENST00000455624
Protein coding
CCDS54570
NM_001160160
Chr.3: 38549128 - 38633332
ENST00000491944
Retained intron
Chr.3: 38614028 - 38649673
ENST00000612060
Protein coding
Chr.3: 38614543 - 38633349