Assay name
HS_SOX6_1900127 QuantiNova LNA PCR Assay
Assay specification
Best coverage assay for SOX6
Best transcript assay for ENST00000528252
Assay targets 10 transcripts
Assay spans exon
Pre-designed assay for dPCR and qPCR.
Assay in Focus Panel
Best transcript assay for ENST00000528252
Assay targets 10 transcripts
Assay spans exon
Pre-designed assay for dPCR and qPCR.
Assay in Focus Panel
Gene symbol
SOX6
Species
Homo sapiens
Main target
ENST00000528252
Exons numbers
2-3
Ensembl exons ids
ENSE00001105560;ENSE00003605869
Amplicon start
411
Amplicon length
86
Assay targets
Transcript Ensembl Id
Bio Type
Ccds
Ref Seq
Chromosome Location
ENST00000316399
Protein coding
CCDS7821
Chr.11: 15966449 - 16341269
ENST00000396356
Protein coding
CCDS7821
NM_033326
Chr.11: 15966449 - 16476388
ENST00000526673
Protein coding
Chr.11: 16318472 - 16382398
ENST00000527619
Protein coding
CCDS53605
NM_017508
Chr.11: 15972708 - 16402846
ENST00000528252
Protein coding
CCDS53604
NM_001145811
Chr.11: 15972699 - 16408884
ENST00000528429
Protein coding
NM_001145819
Chr.11: 15972708 - 16402863
ENST00000530378
Nonsense mediated decay
Chr.11: 16264449 - 16738643
ENST00000533411
Protein coding
Chr.11: 16234640 - 16397562
ENST00000533658
Processed transcript
Chr.11: 16318026 - 16605991
ENST00000533870
Retained intron
Chr.11: 16311245 - 16341269