Assay name
HS_CIITA_2474713 QuantiNova LNA PCR Assay
Wet-lab validated
qPCR wet-lab validated
Assay specification
Best coverage assay for CIITA
Best transcript assay for ENST00000618207
Assay targets 7 transcripts
Assay spans exon
Pre-designed assay for dPCR and qPCR. Wet-lab validated for qPCR.
Assay in Focus Panel
Best transcript assay for ENST00000618207
Assay targets 7 transcripts
Assay spans exon
Pre-designed assay for dPCR and qPCR. Wet-lab validated for qPCR.
Assay in Focus Panel
Gene symbol
CIITA
Gene aliases
C2TA;NLRA;MHC2TA
Species
Homo sapiens
Main target
ENST00000618207
Exons numbers
9-10
Ensembl exons ids
ENSE00003544827;ENSE00003517412
Amplicon start
1058
Amplicon length
76
Assay targets
Transcript Ensembl Id
Bio Type
Ccds
Ref Seq
Chromosome Location
ENST00000324288
Protein coding
CCDS10544
NM_000246
Chr.16: 10877198 - 10936388
ENST00000381835
Protein coding
CCDS66943
NM_001286403
Chr.16: 10877210 - 10924437
ENST00000537380
Processed transcript
Chr.16: 10877331 - 10910243
ENST00000570546
Retained intron
Chr.16: 10877210 - 10924804
ENST00000573309
Retained intron
Chr.16: 10877216 - 10908887
ENST00000618207
Protein coding
Chr.16: 10877198 - 10924983
ENST00000618327
Protein coding
CCDS73826
NM_001286402
Chr.16: 10877198 - 10924983