Assay name
HS_GABARAPL1_2474841 QuantiNova LNA PCR Assay
Wet-lab validated
qPCR wet-lab validated
Assay specification
Best coverage assay for GABARAPL1
Best transcript assay for ENST00000421801
Assay targets 13 transcripts
Assay spans exon
Pre-designed assay for dPCR and qPCR. Wet-lab validated for qPCR.
Assay in Focus Panel
Best transcript assay for ENST00000421801
Assay targets 13 transcripts
Assay spans exon
Pre-designed assay for dPCR and qPCR. Wet-lab validated for qPCR.
Assay in Focus Panel
Gene symbol
GABARAPL1
Gene aliases
gec1;APG8L;ATG8L;ATG8B
Species
Homo sapiens
Main target
ENST00000421801
Exons numbers
2-3
Ensembl exons ids
ENSE00003579148;ENSE00002212576
Amplicon start
448
Amplicon length
61
Assay targets
Transcript Ensembl Id
Bio Type
Ccds
Ref Seq
Chromosome Location
ENST00000266458
Protein coding
CCDS8620
NM_031412
Chr.12: 10212877 - 10223128
ENST00000421801
Protein coding
CCDS86280
Chr.12: 10212836 - 10220831
ENST00000535576
Protein coding
Chr.12: 10213440 - 10221852
ENST00000539170
Protein coding
Chr.12: 10213440 - 10223110
ENST00000539289
Processed transcript
Chr.12: 10213429 - 10220525
ENST00000540424
Nonsense mediated decay
Chr.12: 10212897 - 10223123
ENST00000541960
Nonsense mediated decay
Chr.12: 10213106 - 10223128
ENST00000542722
Nonsense mediated decay
Chr.12: 10212509 - 10222087
ENST00000543602
Protein coding
CCDS86280
Chr.12: 10212883 - 10220778
ENST00000544284
Protein coding
Chr.12: 10212854 - 10221950
ENST00000545290
Protein coding
Chr.12: 10213629 - 10221799
ENST00000545887
Protein coding
CCDS8620
Chr.12: 10212928 - 10221969
ENST00000546017
Protein coding
Chr.12: 10213429 - 10223123