Assay name​
MM_CD44_2105099 QuantiNova LNA PCR Assay
Wet-lab validated​
qPCR wet-lab validated
Assay specification​
Best coverage assay for Cd44
Assay targets 9 transcripts
Assay spans exon
Pre-designed assay for dPCR and qPCR. Wet-lab validated for qPCR.
Assay in Focus Panel
Assay targets 9 transcripts
Assay spans exon
Pre-designed assay for dPCR and qPCR. Wet-lab validated for qPCR.
Assay in Focus Panel
Gene symbol​
Cd44
Species​
Mus musculus
Main target​
ENSMUST00000111194
Exons numbers​
3-5
Ensembl exons ids​
ENSMUSE00000429014;ENSMUSE00000429020;ENSMUSE00000429028
Amplicon start​
675
Amplicon length​
129
Assay targets​
Transcript Ensembl Id
Bio Type
Ccds
Ref Seq
Chromosome Location
ENSMUST00000005218
Protein coding
CCDS16472
NM_009851
Chr.2: 102811141 - 102901625
ENSMUST00000060516
Protein coding
CCDS16470
NM_001039150
Chr.2: 102812530 - 102901495
ENSMUST00000099673
Protein coding
CCDS16471
NM_001039151
Chr.2: 102812547 - 102901510
ENSMUST00000111190
Protein coding
CCDS50648
NM_001177787
Chr.2: 102814120 - 102901350
ENSMUST00000111191
Protein coding
CCDS50649
NM_001177786
Chr.2: 102814120 - 102901369
ENSMUST00000111192
Protein coding
Chr.2: 102814133 - 102901346
ENSMUST00000111194
Protein coding
Chr.2: 102811141 - 102901665
ENSMUST00000111198
Protein coding
CCDS50650
NM_001177785
Chr.2: 102814130 - 102901350
ENSMUST00000124624
Retained intron
Chr.2: 102851893 - 102901458