Assay name
HS_SHMT2_1640718 QuantiNova LNA PCR Assay
Assay specification
Best coverage assay for SHMT2
Assay targets 29 transcripts
Assay is within same exon
IMPORTANT: May detect gDNA
Pre-designed assay for dPCR and qPCR.
Assay targets 29 transcripts
Assay is within same exon
IMPORTANT: May detect gDNA
Pre-designed assay for dPCR and qPCR.
Gene symbol
SHMT2
Gene aliases
mSHMT;SHMT
Species
Homo sapiens
Main target
ENST00000553950
Exons numbers
2
Ensembl exons ids
ENSE00003607407
Amplicon start
158
Amplicon length
76
Assay targets
Transcript Ensembl Id
Bio Type
Ccds
Ref Seq
Chromosome Location
ENST00000328923
Protein coding
CCDS8934
NM_005412
Chr.12: 57229711 - 57234935
ENST00000414700
Protein coding
CCDS53805
NM_001166358
Chr.12: 57230086 - 57234726
ENST00000449049
Protein coding
CCDS53805
NM_001166357
Chr.12: 57230360 - 57234699
ENST00000553324
Retained intron
Chr.12: 57229711 - 57231979
ENST00000553474
Protein coding
CCDS53805
NM_001166359
Chr.12: 57230328 - 57234551
ENST00000553529
Protein coding
Chr.12: 57230167 - 57231906
ENST00000553837
Nonsense mediated decay
Chr.12: 57230384 - 57234726
ENST00000553949
Processed transcript
Chr.12: 57230701 - 57232261
ENST00000553950
Retained intron
Chr.12: 57229715 - 57231769
ENST00000554310
Protein coding
Chr.12: 57230167 - 57232241
ENST00000554467
Retained intron
Chr.12: 57229711 - 57234726
ENST00000554600
Processed transcript
Chr.12: 57229684 - 57232572
ENST00000554604
Nonsense mediated decay
Chr.12: 57230394 - 57232801
ENST00000554656
Processed transcript
Chr.12: 57230275 - 57232534
ENST00000554975
Protein coding
Chr.12: 57230360 - 57232568
ENST00000555116
Nonsense mediated decay
Chr.12: 57230368 - 57234763
ENST00000555563
Nonsense mediated decay
Chr.12: 57229749 - 57233239
ENST00000555773
Protein coding
Chr.12: 57230354 - 57231913
ENST00000555774
Nonsense mediated decay
Chr.12: 57230360 - 57234935
ENST00000556689
Protein coding
Chr.12: 57229724 - 57232822
ENST00000556737
Protein coding
Chr.12: 57230703 - 57231906
ENST00000556825
Nonsense mediated decay
Chr.12: 57229573 - 57234935
ENST00000557302
Retained intron
Chr.12: 57230171 - 57231185
ENST00000557348
Nonsense mediated decay
Chr.12: 57230103 - 57234476
ENST00000557427
Protein coding
Chr.12: 57230280 - 57232238
ENST00000557433
Nonsense mediated decay
Chr.12: 57229759 - 57234726
ENST00000557487
Protein coding
CCDS55837
NM_001166356
Chr.12: 57229711 - 57234726
ENST00000557703
Protein coding
Chr.12: 57230115 - 57231890
ENST00000557740
Processed transcript
Chr.12: 57229661 - 57231913