CDK5R1

CDK5R1 Gene Summary

The protein encoded by this gene (p35) is a neuron-specific activator of cyclin-dependent kinase 5 (CDK5); the activation of CDK5 is required for proper development of the central nervous system. The p35 form of this protein is proteolytically cleaved by calpain, generating a p25 form. The cleavage of p35 into p25 results in relocalization of the protein from the cell periphery to nuclear and perinuclear regions. P25 deregulates CDK5 activity by prolonging its activation and changing its cellular location. The p25 form accumulates in the brain neurons of patients with Alzheimer's disease. This accumulation correlates with an increase in CDK5 kinase activity, and may lead to aberrantly phosphorylated forms of the microtubule-associated protein tau, which contributes to Alzheimer's disease. [provided by RefSeq, Jul 2008]

Details

Type
Protein Coding
Official Symbol
CDK5R1
Official Name
cyclin dependent kinase 5 regulatory subunit 1 [Source:HGNC Symbol;Acc:HGNC:1775]
Ensembl ID
ENSG00000176749
Bio databases IDs NCBI: 8851 Ensembl: ENSG00000176749
Aliases cyclin dependent kinase 5 regulatory subunit 1
Synonyms
CDK5P35,CDK5R,CDK5R1 p35,cyclin dependent kinase 5, regulatory subunit 1,cyclin-dependent kinase 5 regulatory subunit 1,D11Bwg0379e,D930042A2,NCK5A,p23,p25,p35,p35nck5a
Species
Human, homo_sapiens

Protein Domains

A protein domain is a distinct structural or functional region within a protein that can evolve, function, and exist independently of the rest of the protein chain. These domains often fold into stable, three-dimensional structures and are associated with specific biological functions, such as binding to DNA, other proteins, or small molecules.
  • protein kinase binding
  • protease binding
  • heat shock protein binding
  • calcium ion binding
  • Cdk5 binding domain
  • ephrin receptor binding
  • protein binding
  • ionotropic glutamate receptor binding
  • cyclin-dependent protein kinase regulator
  • Cyclin-dependent kinase 5 activator protein
  • kinase
  • protein kinase activator
  • actin filament binding
  • cytoskeletal protein binding
  • actin binding
  • cadherin binding

Pathways

Biological processes and signaling networks where the CDK5R1 gene plays a role, providing insight into its function and relevance in health or disease.

Top Findings

The most significant associations for this gene, including commonly observed domains, pathway involvement, and functional highlights based on current data.
binds
  • NTRK1
  • NTRK2
  • NTRK3
  • DNMT1
  • PPP1R9B
  • KRT40
  • AATK
  • MIB1
  • AMPH
  • FZR1
disease
  • astrocytosis
  • neuroinflammation
  • seizures
  • overall survival
  • Huntington disease
  • cognitive impairment
  • lung adenocarcinoma
  • lung adenocarcinoma formation
  • Alzheimer disease
  • motor dysfunction
regulated by
  • quercetin
  • HSF2
  • PI3K (complex)
  • APP
  • TGFB1
  • N-Ac-Leu-Leu-norleucinal
  • calpain
  • keratinocytes
  • IL2
  • lipopolysaccharide
regulates
  • reactive oxygen species
  • IL6
  • TNF
  • IL1B
  • MAPK1
  • JUN
  • CASP3
  • MAP2
  • FOS
  • CDK5
role in cell
  • activation in
  • proliferation
  • apoptosis
  • expression in
  • binding in
  • activation
  • accumulation
  • morphology
  • quantity
  • migration

Subcellular Expression

Locations within the cell where the protein is known or predicted to be active, providing insight into its function and cellular context.
  • Nucleus
  • plasma membrane fraction
  • high-density microsomal fractions
  • synaptic plasma membrane fractions
  • nuclear fraction
  • low-density microsomal fraction
  • detergent-insoluble fractions
  • membrane fraction
  • cytoplasmic cytoskeleton
  • intracellular membrane-bounded organelle
  • Cytoplasm
  • presynaptic regions
  • periaxonal regions
  • cell periphery
  • somatodendritic region
  • perinuclear region
  • cellular membrane
  • actin cytoskeleton
  • Plasma Membrane
  • cell-cell contacts
  • cytoplasmic particles
  • cytosol
  • nucleoplasm
  • sperm tail
  • outer dense fibers
  • dendritic spines
  • neuromuscular junctions
  • growth cone
  • neurites
  • ruffled borders
  • myofibrils
  • endocytotic vesicle
  • perikaryon
  • axons
  • dendrites
  • postsynaptic density
  • axon terminals
  • dendritic shafts
  • lamellipodia
  • vesicle fraction
  • cytoskeletal fraction
  • synaptosomal fractions
  • cytoplasmic fraction
  • cytosolic fraction

Gene Ontology Annotations

Describes the biological processes, cellular components, and molecular functions associated with the CDK5R1 gene, providing context for its role in the cell.

BIOLOGICAL PROCESS

Functions and activities the gene product is involved in
  • positive regulation of protein targeting to membrane
  • layer formation in cerebral cortex
  • embryo development ending in birth or egg hatching
  • axon guidance
  • neuron cell-cell adhesion
  • G-protein coupled acetylcholine receptor signaling pathway
  • regulation of neuron differentiation
  • positive regulation of neuron apoptotic process
  • regulation of cyclin-dependent protein kinase activity
  • axonal fasciculation
  • neuron migration
  • negative regulation of transcription, DNA-dependent
  • ionotropic glutamate receptor signaling pathway
  • positive regulation of microtubule polymerization
  • regulation of dendritic spine morphogenesis
  • neuron differentiation
  • cerebellum development
  • neuron projection development
  • superior olivary nucleus maturation
  • hippocampus development
  • microtubule cytoskeleton organization
  • brain development
  • regulation of actin cytoskeleton organization
  • rhythmic process
  • ephrin receptor signaling pathway
  • regulation of macroautophagy
  • peptidyl-serine phosphorylation
  • peptidyl-threonine phosphorylation
  • G1 to G0 transition involved in cell differentiation

CELLULAR COMPONENT

Where in the cell the gene product is active
  • postsynaptic density
  • cyclin-dependent protein kinase holoenzyme complex
  • neuronal cell body
  • perikaryon
  • neuron projection
  • plasma membrane
  • nucleoplasm
  • growth cone
  • dendrite
  • nucleus
  • contractile fiber
  • perinuclear region of cytoplasm
  • cytoplasm
  • intracellular membrane-bounded organelle
  • dendritic spine
  • membrane
  • cytosol
  • neuromuscular junction
  • cyclin-dependent protein kinase 5 holoenzyme complex
  • axon

MOLECULAR FUNCTION

What the gene product does at the molecular level
  • protein kinase binding
  • ionotropic glutamate receptor binding
  • protein serine/threonine kinase activator activity
  • protein kinase activator activity
  • ephrin receptor binding
  • protease binding
  • protein kinase activity
  • alpha-tubulin binding
  • actin filament binding
  • protein binding
  • calcium ion binding
  • cadherin binding
  • beta-tubulin binding
  • kinase activity

Gene-Specific Assays for Results You Can Trust

Streamline your workflow with assays designed for this gene. Our targeted dPCR and qPCR assays help you generate meaningful data – efficiently and accurately.