Assay name
HS_SPG7_1686608 QuantiNova LNA PCR Assay
Wet-lab validated
qPCR wet-lab validated
Assay specification
Best coverage assay for SPG7
Best transcript assay for ENST00000645818
Assay targets 40 transcripts
Assay spans exon
Pre-designed assay for dPCR and qPCR. Wet-lab validated for qPCR.
Assay in Focus Panel
Best transcript assay for ENST00000645818
Assay targets 40 transcripts
Assay spans exon
Pre-designed assay for dPCR and qPCR. Wet-lab validated for qPCR.
Assay in Focus Panel
Gene symbol
SPG7
Gene aliases
CAR;SPG5C;CMAR
Species
Homo sapiens
Main target
ENST00000645818
Exons numbers
2-3
Ensembl exons ids
ENSE00003614940;ENSE00003626965
Amplicon start
531
Amplicon length
94
Assay targets
Transcript Ensembl Id
Bio Type
Ccds
Ref Seq
Chromosome Location
ENST00000268704
Protein coding
Chr.16: 89508410 - 89557744
ENST00000341316
Protein coding
CCDS10978
NM_199367
Chr.16: 89508411 - 89537721
ENST00000562775
Retained intron
Chr.16: 89508554 - 89527380
ENST00000564047
Retained intron
Chr.16: 89508409 - 89531602
ENST00000564409
Nonsense mediated decay
Chr.16: 89510538 - 89532570
ENST00000566371
Protein coding
Chr.16: 89508394 - 89530780
ENST00000568151
Processed transcript
Chr.16: 89508713 - 89524077
ENST00000569363
Processed transcript
Chr.16: 89508403 - 89514571
ENST00000642334
Nonsense mediated decay
Chr.16: 89508545 - 89557387
ENST00000642371
Nonsense mediated decay
Chr.16: 89508486 - 89532522
ENST00000642436
Processed transcript
Chr.16: 89508406 - 89540977
ENST00000643105
Nonsense mediated decay
Chr.16: 89508498 - 89557747
ENST00000643307
Protein coding
Chr.16: 89508393 - 89537226
ENST00000643345
Nonsense mediated decay
Chr.16: 89508410 - 89546075
ENST00000643649
Protein coding
Chr.16: 89508367 - 89557272
ENST00000643668
Nonsense mediated decay
Chr.16: 89508401 - 89557750
ENST00000643724
Nonsense mediated decay
Chr.16: 89508403 - 89557747
ENST00000643957
Nonsense mediated decay
Chr.16: 89508535 - 89529493
ENST00000644210
Nonsense mediated decay
Chr.16: 89508409 - 89557405
ENST00000644225
Retained intron
Chr.16: 89508401 - 89557747
ENST00000644498
Nonsense mediated decay
Chr.16: 89508395 - 89557747
ENST00000644781
Protein coding
Chr.16: 89508403 - 89557747
ENST00000644901
Nonsense mediated decay
Chr.16: 89508403 - 89557747
ENST00000645042
Nonsense mediated decay
Chr.16: 89508403 - 89557747
ENST00000645063
Protein coding
NM_001363850
Chr.16: 89508403 - 89557748
ENST00000645354
Nonsense mediated decay
Chr.16: 89508503 - 89554544
ENST00000645533
Nonsense mediated decay
Chr.16: 89508411 - 89531985
ENST00000645818
Protein coding
CCDS10977
NM_003119
Chr.16: 89508122 - 89557768
ENST00000645897
Protein coding
Chr.16: 89508397 - 89557739
ENST00000645977
Retained intron
Chr.16: 89508403 - 89557755
ENST00000646263
Nonsense mediated decay
CCDS10978
Chr.16: 89508403 - 89557748
ENST00000646303
Protein coding
Chr.16: 89507502 - 89557748
ENST00000646445
Protein coding
Chr.16: 89510501 - 89557737
ENST00000646531
Nonsense mediated decay
Chr.16: 89508403 - 89557747
ENST00000646589
Nonsense mediated decay
Chr.16: 89508410 - 89557747
ENST00000646716
Protein coding
Chr.16: 89508410 - 89557701
ENST00000646826
Nonsense mediated decay
Chr.16: 89508410 - 89557737
ENST00000646930
Nonsense mediated decay
Chr.16: 89508403 - 89557690
ENST00000646958
Retained intron
Chr.16: 89508468 - 89548336
ENST00000647079
Protein coding
Chr.16: 89490917 - 89557748