Assay name
HS_PBRM1_1661401 QuantiNova LNA PCR Assay
Assay specification
Best coverage assay for PBRM1
Assay targets 12 transcripts
Assay spans exon
Pre-designed assay for dPCR and qPCR.
Assay in Focus Panel
Assay targets 12 transcripts
Assay spans exon
Pre-designed assay for dPCR and qPCR.
Assay in Focus Panel
Gene symbol
PBRM1
Gene aliases
BAF180;PB1;SMARCH1
Species
Homo sapiens
Main target
ENST00000394830
Exons numbers
5-6
Ensembl exons ids
ENSE00003598212;ENSE00001519777
Amplicon start
549
Amplicon length
102
Assay targets
Transcript Ensembl Id
Bio Type
Ccds
Ref Seq
Chromosome Location
ENST00000296302
Protein coding
Chr.3: 52547990 - 52679713
ENST00000337303
Protein coding
CCDS2860
NM_001350079;NM_181042
Chr.3: 52547990 - 52679714
ENST00000356770
Protein coding
Chr.3: 52545352 - 52679714
ENST00000394830
Protein coding
CCDS43099
NM_018313
Chr.3: 52547841 - 52685836
ENST00000409057
Protein coding
CCDS87087
NM_001350075
Chr.3: 52547991 - 52679714
ENST00000409114
Protein coding
Chr.3: 52548010 - 52679714
ENST00000409767
Protein coding
NM_001350076;NM_001350078;NM_001350074;NM_001350077
Chr.3: 52548011 - 52679714
ENST00000410007
Protein coding
Chr.3: 52547991 - 52679714
ENST00000412587
Nonsense mediated decay
Chr.3: 52547990 - 52679714
ENST00000423351
Protein coding
Chr.3: 52554783 - 52679714
ENST00000431678
Protein coding
Chr.3: 52651764 - 52685850
ENST00000446103
Protein coding
Chr.3: 52586430 - 52678567