Assay name
HS_PAX6_1286291 QuantiNova LNA PCR Assay
Assay specification
Best coverage assay for PAX6
Assay targets 68 transcripts
Assay spans exon
Pre-designed assay for dPCR and qPCR.
Assay targets 68 transcripts
Assay spans exon
Pre-designed assay for dPCR and qPCR.
Gene symbol
PAX6
Gene aliases
D11S812E;AN;WAGR;AN1;AN2
Species
Homo sapiens
Main target
ENST00000643871
Exons numbers
8-9
Ensembl exons ids
ENSE00003523920;ENSE00003602163
Amplicon start
1131
Amplicon length
116
Assay targets
Transcript Ensembl Id
Bio Type
Ccds
Ref Seq
Chromosome Location
ENST00000241001
Protein coding
CCDS31451
NM_001127612
Chr.11: 31789913 - 31817938
ENST00000379107
Protein coding
CCDS31452
Chr.11: 31789194 - 31810305
ENST00000379109
Protein coding
CCDS31451
Chr.11: 31788911 - 31810667
ENST00000379111
Protein coding
Chr.11: 31789946 - 31811952
ENST00000379115
Protein coding
Chr.11: 31790727 - 31811322
ENST00000379123
Protein coding
Chr.11: 31789947 - 31811322
ENST00000379129
Protein coding
CCDS31452
Chr.11: 31788912 - 31817961
ENST00000379132
Protein coding
CCDS31451
Chr.11: 31788908 - 31817961
ENST00000419022
Protein coding
CCDS31452
NM_001604
Chr.11: 31784792 - 31811331
ENST00000423822
Protein coding
Chr.11: 31789941 - 31817910
ENST00000438681
Protein coding
Chr.11: 31790774 - 31811231
ENST00000464174
Processed transcript
Chr.11: 31789947 - 31800651
ENST00000470027
Retained intron
Chr.11: 31789936 - 31804460
ENST00000471303
Retained intron
Chr.11: 31789946 - 31811121
ENST00000474783
Retained intron
Chr.11: 31789918 - 31811328
ENST00000481563
Protein coding
CCDS86189
NM_001310161
Chr.11: 31789934 - 31804237
ENST00000494377
Retained intron
Chr.11: 31789947 - 31802946
ENST00000524853
Protein coding
Chr.11: 31789951 - 31812745
ENST00000530373
Processed transcript
Chr.11: 31790718 - 31800667
ENST00000531910
Retained intron
Chr.11: 31793219 - 31802014
ENST00000533333
Retained intron
Chr.11: 31789936 - 31811308
ENST00000606377
Protein coding
CCDS31452
Chr.11: 31784779 - 31811134
ENST00000638250
Protein coding
Chr.11: 31789947 - 31811057
ENST00000638346
Protein coding
Chr.11: 31790014 - 31804267
ENST00000638629
Protein coding
CCDS86189
NM_001310160
Chr.11: 31789934 - 31804046
ENST00000638685
Protein coding
Chr.11: 31789026 - 31812823
ENST00000638696
Protein coding
Chr.11: 31789934 - 31806411
ENST00000638755
Protein coding
Chr.11: 31789934 - 31806411
ENST00000638762
Protein coding
Chr.11: 31790769 - 31804258
ENST00000638802
Protein coding
Chr.11: 31790006 - 31803673
ENST00000638853
Protein coding
Chr.11: 31789962 - 31805467
ENST00000638878
Protein coding
Chr.11: 31790790 - 31803673
ENST00000638903
Protein coding
CCDS31452
Chr.11: 31789195 - 31818062
ENST00000638913
Retained intron
Chr.11: 31789962 - 31811341
ENST00000638914
Protein coding
CCDS31451
Chr.11: 31784792 - 31811677
ENST00000638963
Protein coding
Chr.11: 31789517 - 31806456
ENST00000638965
Protein coding
Chr.11: 31789830 - 31817937
ENST00000639006
Protein coding
Chr.11: 31790738 - 31803620
ENST00000639034
Protein coding
CCDS86190
NM_001310159
Chr.11: 31793209 - 31811331
ENST00000639054
Retained intron
Chr.11: 31790762 - 31811118
ENST00000639061
Protein coding
Chr.11: 31789946 - 31803245
ENST00000639079
Protein coding
Chr.11: 31793273 - 31804255
ENST00000639109
Protein coding
Chr.11: 31789962 - 31804006
ENST00000639386
Protein coding
CCDS86189
Chr.11: 31789934 - 31804415
ENST00000639394
Nonsense mediated decay
Chr.11: 31789957 - 31811068
ENST00000639409
Protein coding
CCDS31452
NM_001258463
Chr.11: 31789202 - 31812183
ENST00000639548
Protein coding
CCDS86189
Chr.11: 31789934 - 31804175
ENST00000639916
Protein coding
CCDS31451
NM_001258465
Chr.11: 31789026 - 31811144
ENST00000639943
Protein coding
Chr.11: 31790791 - 31808802
ENST00000639950
Protein coding
Chr.11: 31789946 - 31813131
ENST00000640125
Protein coding
CCDS86189
Chr.11: 31789934 - 31804175
ENST00000640172
Retained intron
Chr.11: 31793224 - 31811331
ENST00000640242
Protein coding
Chr.11: 31793449 - 31811114
ENST00000640287
Protein coding
Chr.11: 31789936 - 31806629
ENST00000640335
Protein coding
Chr.11: 31790763 - 31810124
ENST00000640368
Protein coding
CCDS31452
Chr.11: 31784782 - 31811310
ENST00000640431
Protein coding
Chr.11: 31790823 - 31814976
ENST00000640460
Protein coding
Chr.11: 31789962 - 31807656
ENST00000640610
Protein coding
CCDS31451
Chr.11: 31788908 - 31811331
ENST00000640613
Protein coding
Chr.11: 31789938 - 31811118
ENST00000640684
Protein coding
Chr.11: 31793247 - 31810991
ENST00000640735
Retained intron
Chr.11: 31789962 - 31801992
ENST00000640766
Protein coding
Chr.11: 31789946 - 31805795
ENST00000640872
Protein coding
Chr.11: 31789952 - 31803960
ENST00000640963
Protein coding
Chr.11: 31789946 - 31806916
ENST00000640975
Protein coding
CCDS31452
NM_001310158
Chr.11: 31789202 - 31812342
ENST00000643871
Protein coding
CCDS31451
NM_001258464;NM_000280
Chr.11: 31784792 - 31811331
ENST00000645710
Protein coding
CCDS31452
NM_001258462
Chr.11: 31789026 - 31817961