Assay name​
HS_ATG9A_1560376 QuantiNova LNA PCR Assay
Assay specification​
Best coverage assay for ATG9A
Assay targets 18 transcripts
Assay spans exon
Pre-designed assay for dPCR and qPCR.
Assay targets 18 transcripts
Assay spans exon
Pre-designed assay for dPCR and qPCR.
Gene symbol​
ATG9A
Gene aliases​
FLJ22169;APG9L1
Species​
Homo sapiens
Main target​
ENST00000434939
Exons numbers​
3-4
Ensembl exons ids​
ENSE00003636157;ENSE00003689341
Amplicon start​
406
Amplicon length​
75
Assay targets​
Transcript Ensembl Id
Bio Type
Ccds
Ref Seq
Chromosome Location
ENST00000361242
Protein coding
CCDS42820
NM_001077198
Chr.2: 219219380 - 219229636
ENST00000396761
Protein coding
CCDS42820
NM_024085
Chr.2: 219219380 - 219229717
ENST00000409033
Nonsense mediated decay
Chr.2: 219219380 - 219229626
ENST00000409422
Protein coding
Chr.2: 219220447 - 219229629
ENST00000409618
Protein coding
CCDS42820
Chr.2: 219219382 - 219229368
ENST00000412355
Nonsense mediated decay
Chr.2: 219225146 - 219229636
ENST00000428226
Protein coding
Chr.2: 219225078 - 219229618
ENST00000432520
Protein coding
Chr.2: 219225153 - 219229342
ENST00000434939
Protein coding
Chr.2: 219225506 - 219228693
ENST00000436856
Protein coding
Chr.2: 219224808 - 219229618
ENST00000439812
Protein coding
Chr.2: 219225194 - 219229639
ENST00000443140
Protein coding
Chr.2: 219225494 - 219229325
ENST00000455079
Processed transcript
Chr.2: 219225415 - 219229639
ENST00000456708
Nonsense mediated decay
Chr.2: 219225196 - 219229639
ENST00000457841
Protein coding
Chr.2: 219225071 - 219229639
ENST00000466217
Retained intron
Chr.2: 219225332 - 219229594
ENST00000486766
Retained intron
Chr.2: 219225415 - 219229606
ENST00000488833
Processed transcript
Chr.2: 219226874 - 219229340