Assay name
HS_SMARCE1_1846868 QuantiNova LNA PCR Assay
Assay specification
Best coverage assay for SMARCE1
Assay targets 43 transcripts
Assay spans exon
IMPORTANT: May detect gDNA
Pre-designed assay for dPCR and qPCR.
Assay targets 43 transcripts
Assay spans exon
IMPORTANT: May detect gDNA
Pre-designed assay for dPCR and qPCR.
Gene symbol
SMARCE1
Gene aliases
BAF57
Species
Homo sapiens
Main target
ENST00000577721
Exons numbers
3-4
Ensembl exons ids
ENSE00003461532;ENSE00003509150
Amplicon start
109
Amplicon length
104
Assay targets
Transcript Ensembl Id
Bio Type
Ccds
Ref Seq
Chromosome Location
ENST00000264640
Protein coding
Chr.17: 40627781 - 40647830
ENST00000348513
Protein coding
CCDS11370
NM_003079
Chr.17: 40624962 - 40647818
ENST00000377808
Protein coding
Chr.17: 40627762 - 40647842
ENST00000400122
Protein coding
Chr.17: 40627761 - 40648137
ENST00000431889
Protein coding
Chr.17: 40628468 - 40647839
ENST00000447024
Protein coding
Chr.17: 40629456 - 40647842
ENST00000469334
Retained intron
Chr.17: 40627763 - 40647824
ENST00000478349
Protein coding
Chr.17: 40630831 - 40647828
ENST00000481231
Nonsense mediated decay
Chr.17: 40636409 - 40647824
ENST00000493660
Retained intron
Chr.17: 40634163 - 40647842
ENST00000577721
Protein coding
Chr.17: 40635933 - 40647833
ENST00000578044
Protein coding
Chr.17: 40628785 - 40648396
ENST00000578112
Nonsense mediated decay
Chr.17: 40627710 - 40647848
ENST00000578995
Retained intron
Chr.17: 40635742 - 40637731
ENST00000580419
Protein coding
Chr.17: 40627743 - 40647817
ENST00000580654
Protein coding
Chr.17: 40630909 - 40647835
ENST00000582955
Protein coding
Chr.17: 40636066 - 40647347
ENST00000642576
Retained intron
Chr.17: 40627759 - 40647851
ENST00000643030
Retained intron
Chr.17: 40627738 - 40647832
ENST00000643318
Protein coding
Chr.17: 40625003 - 40648654
ENST00000643683
Protein coding
CCDS11370
Chr.17: 40627763 - 40647641
ENST00000644257
Retained intron
Chr.17: 40634163 - 40647838
ENST00000644523
Processed transcript
Chr.17: 40627762 - 40642366
ENST00000644527
Protein coding
Chr.17: 40627457 - 40647832
ENST00000644701
Protein coding
Chr.17: 40627722 - 40647837
ENST00000644909
Nonsense mediated decay
Chr.17: 40627840 - 40647839
ENST00000645104
Protein coding
Chr.17: 40629623 - 40647832
ENST00000645152
Retained intron
Chr.17: 40628109 - 40647828
ENST00000645227
Nonsense mediated decay
Chr.17: 40627744 - 40647822
ENST00000645478
Nonsense mediated decay
Chr.17: 40632223 - 40642512
ENST00000645663
Retained intron
Chr.17: 40631814 - 40647814
ENST00000646242
Retained intron
Chr.17: 40627467 - 40647855
ENST00000646283
Protein coding
Chr.17: 40627773 - 40647839
ENST00000646401
Retained intron
Chr.17: 40627743 - 40647846
ENST00000646448
Retained intron
Chr.17: 40628776 - 40647833
ENST00000646482
Protein coding
Chr.17: 40630455 - 40645836
ENST00000646856
Nonsense mediated decay
Chr.17: 40628149 - 40647846
ENST00000647221
Retained intron
Chr.17: 40634164 - 40647840
ENST00000647294
Nonsense mediated decay
Chr.17: 40627745 - 40647844
ENST00000647347
Retained intron
Chr.17: 40636178 - 40647827
ENST00000647508
Protein coding
Chr.17: 40627719 - 40648370
ENST00000647515
Protein coding
Chr.17: 40627761 - 40647852