Assay name
HS_SMARCA4_1576328 QuantiNova LNA PCR Assay
Assay specification
Best coverage assay for SMARCA4
Assay targets 41 transcripts
Assay spans exon
Pre-designed assay for dPCR and qPCR.
Assay in Focus Panel
Assay targets 41 transcripts
Assay spans exon
Pre-designed assay for dPCR and qPCR.
Assay in Focus Panel
Gene symbol
SMARCA4
Gene aliases
hSNF2b;BRG1;BAF190;SNF2;SWI2;SNF2-BETA;SNF2LB;FLJ39786;SNF2L4
Species
Homo sapiens
Main target
ENST00000646593
Exons numbers
4-5
Ensembl exons ids
ENSE00003627728;ENSE00003537973
Amplicon start
402
Amplicon length
83
Assay targets
Transcript Ensembl Id
Bio Type
Ccds
Ref Seq
Chromosome Location
ENST00000344626
Protein coding
CCDS12253
NM_003072
Chr.19: 10960825 - 11062282
ENST00000413806
Protein coding
Chr.19: 10984152 - 11062282
ENST00000429416
Protein coding
CCDS12253
NM_001128844
Chr.19: 10961001 - 11062256
ENST00000444061
Protein coding
CCDS54218
Chr.19: 10961110 - 11062271
ENST00000450717
Protein coding
Chr.19: 10984152 - 11062282
ENST00000541122
Protein coding
CCDS45972
Chr.19: 10961081 - 11061816
ENST00000586122
Processed transcript
Chr.19: 11018312 - 11023588
ENST00000587988
Retained intron
Chr.19: 11018870 - 11023561
ENST00000589677
Protein coding
CCDS45973
NM_001128846
Chr.19: 10961105 - 11061816
ENST00000590574
Protein coding
CCDS54217
Chr.19: 10961321 - 11062273
ENST00000591545
Protein coding
Chr.19: 10984279 - 11032666
ENST00000591595
Retained intron
Chr.19: 11019014 - 11062276
ENST00000592604
Retained intron
Chr.19: 11012344 - 11061989
ENST00000642350
Protein coding
Chr.19: 10994921 - 11062128
ENST00000642628
Protein coding
Chr.19: 10960957 - 11062263
ENST00000642726
Protein coding
Chr.19: 10960932 - 11062279
ENST00000643208
Protein coding
Chr.19: 10994852 - 11062258
ENST00000643296
Protein coding
CCDS45972
NM_001128845
Chr.19: 10960957 - 11062276
ENST00000643534
Protein coding
Chr.19: 10996335 - 11062118
ENST00000643549
Protein coding
Chr.19: 10960932 - 11062204
ENST00000643857
Protein coding
Chr.19: 10996265 - 11062247
ENST00000643995
Protein coding
Chr.19: 10986420 - 11062266
ENST00000644065
Protein coding
Chr.19: 10991175 - 11062040
ENST00000644267
Retained intron
Chr.19: 10996265 - 11040314
ENST00000644290
Nonsense mediated decay
Chr.19: 10994998 - 11032445
ENST00000644327
Nonsense mediated decay
Chr.19: 10989425 - 11062271
ENST00000644737
Protein coding
CCDS45972
Chr.19: 10960932 - 11062468
ENST00000644963
Protein coding
Chr.19: 10991260 - 11062266
ENST00000645061
Nonsense mediated decay
Chr.19: 10994921 - 11062253
ENST00000645460
Protein coding
CCDS54218
NM_001128848
Chr.19: 10961043 - 11062271
ENST00000645648
Nonsense mediated decay
Chr.19: 11010394 - 11062211
ENST00000646183
Protein coding
Chr.19: 10996274 - 11062028
ENST00000646236
Nonsense mediated decay
Chr.19: 11019603 - 11040495
ENST00000646484
Protein coding
CCDS54217
NM_001128847
Chr.19: 10960932 - 11062279
ENST00000646510
Protein coding
CCDS54217
Chr.19: 10960992 - 11062276
ENST00000646513
Protein coding
Chr.19: 11003110 - 11027861
ENST00000646593
Nonsense mediated decay
Chr.19: 11007902 - 11062233
ENST00000646693
Protein coding
NM_001128849
Chr.19: 10960932 - 11062279
ENST00000646746
Protein coding
Chr.19: 10996317 - 11062252
ENST00000647230
Protein coding
CCDS54217
Chr.19: 10960957 - 11062276
ENST00000647268
Protein coding
Chr.19: 10996264 - 11062140