Assay name
HS_ATG16L2_2474581 QuantiNova LNA PCR Assay
Wet-lab validated
qPCR wet-lab validated
Assay specification
Best coverage assay for ATG16L2
Best transcript assay for ENST00000541367
Assay targets 11 transcripts
Assay spans exon
Pre-designed assay for dPCR and qPCR. Wet-lab validated for qPCR.
Assay in Focus Panel
Best transcript assay for ENST00000541367
Assay targets 11 transcripts
Assay spans exon
Pre-designed assay for dPCR and qPCR. Wet-lab validated for qPCR.
Assay in Focus Panel
Gene symbol
ATG16L2
Gene aliases
FLJ00012;WDR80;ATG16B
Species
Homo sapiens
Main target
ENST00000541367
Exons numbers
2-4
Ensembl exons ids
ENSE00003495750;ENSE00003659874;ENSE00003505388
Amplicon start
281
Amplicon length
136
Assay targets
Transcript Ensembl Id
Bio Type
Ccds
Ref Seq
Chromosome Location
ENST00000321297
Protein coding
CCDS31634
NM_001318766;NM_033388
Chr.11: 72814411 - 72829635
ENST00000435507
Nonsense mediated decay
Chr.11: 72814415 - 72829633
ENST00000439504
Retained intron
Chr.11: 72814419 - 72829635
ENST00000535830
Protein coding
Chr.11: 72822322 - 72827272
ENST00000536995
Retained intron
Chr.11: 72821888 - 72829633
ENST00000537837
Nonsense mediated decay
Chr.11: 72822477 - 72826243
ENST00000538973
Protein coding
Chr.11: 72822341 - 72829595
ENST00000540222
Protein coding
Chr.11: 72822439 - 72829598
ENST00000541367
Protein coding
Chr.11: 72822341 - 72829612
ENST00000541999
Nonsense mediated decay
Chr.11: 72822234 - 72825392
ENST00000544490
Nonsense mediated decay
Chr.11: 72814427 - 72829633