Assay name​
HS_SCN2A_1627436 QuantiNova LNA PCR Assay
Assay specification​
Best coverage assay for SCN2A
Assay targets 16 transcripts
Assay spans exon
Pre-designed assay for dPCR and qPCR.
Assay in Focus Panel
Assay targets 16 transcripts
Assay spans exon
Pre-designed assay for dPCR and qPCR.
Assay in Focus Panel
Gene symbol​
SCN2A
Gene aliases​
Nav1.2;HBSCII;HBSCI;SCN2A1;SCN2A2
Species​
Homo sapiens
Main target​
ENST00000636384
Exons numbers​
10-11
Ensembl exons ids​
ENSE00003622830;ENSE00003650170
Amplicon start​
1631
Amplicon length​
112
Assay targets​
Transcript Ensembl Id
Bio Type
Ccds
Ref Seq
Chromosome Location
ENST00000283256
Protein coding
CCDS33314
NM_021007
Chr.2: 165294031 - 165392310
ENST00000375427
Protein coding
CCDS33313
NM_001040143
Chr.2: 165295773 - 165392308
ENST00000375437
Protein coding
CCDS33314
NM_001040142
Chr.2: 165239414 - 165392304
ENST00000424833
Protein coding
Chr.2: 165239402 - 165315604
ENST00000480032
Retained intron
Chr.2: 165294044 - 165392051
ENST00000631182
Protein coding
CCDS33313
Chr.2: 165239488 - 165392032
ENST00000635945
Processed transcript
Chr.2: 165239445 - 165327761
ENST00000636071
Protein coding
CCDS33313
Chr.2: 165239434 - 165392310
ENST00000636135
Nonsense mediated decay
Chr.2: 165239545 - 165392026
ENST00000636384
Nonsense mediated decay
Chr.2: 165239372 - 165392310
ENST00000636662
Nonsense mediated decay
Chr.2: 165294037 - 165392310
ENST00000636769
Nonsense mediated decay
Chr.2: 165294089 - 165392146
ENST00000636985
Protein coding
Chr.2: 165239445 - 165392310
ENST00000637266
Protein coding
CCDS33314
Chr.2: 165241060 - 165392310
ENST00000637367
Nonsense mediated decay
Chr.2: 165239438 - 165331568
ENST00000638151
Processed transcript
Chr.2: 165239969 - 165327753