Assay name
HS_TCF4_1333417 QuantiNova LNA PCR Assay
Wet-lab validated
qPCR wet-lab validated
Assay specification
Best coverage assay for TCF4
Best transcript assay for ENST00000356073
Assay targets 52 transcripts
Assay spans exon
Pre-designed assay for dPCR and qPCR. Wet-lab validated for qPCR.
Assay in Focus Panel
Best transcript assay for ENST00000356073
Assay targets 52 transcripts
Assay spans exon
Pre-designed assay for dPCR and qPCR. Wet-lab validated for qPCR.
Assay in Focus Panel
Gene symbol
TCF4
Gene aliases
SEF2-1B;ITF2;bHLHb19;E2-2
Species
Homo sapiens
Main target
ENST00000356073
Exons numbers
10-11
Ensembl exons ids
ENSE00003564895;ENSE00003657177
Amplicon start
1332
Amplicon length
106
Assay targets
Transcript Ensembl Id
Bio Type
Ccds
Ref Seq
Chromosome Location
ENST00000354452
Protein coding
CCDS42438
NM_001083962
Chr.18: 55226784 - 55588232
ENST00000356073
Protein coding
CCDS11960
NM_003199
Chr.18: 55222334 - 55588629
ENST00000398339
Protein coding
CCDS58631
NM_001243226
Chr.18: 55227936 - 55636027
ENST00000457482
Protein coding
CCDS58624
NM_001243234
Chr.18: 55227683 - 55322222
ENST00000537578
Protein coding
CCDS58629
NM_001243227
Chr.18: 55227752 - 55589836
ENST00000537856
Protein coding
CCDS58626
Chr.18: 55227849 - 55401757
ENST00000540999
Protein coding
CCDS77192
NM_001348219;NM_001306207
Chr.18: 55227690 - 55586105
ENST00000543082
Protein coding
CCDS58628
NM_001243231;NM_001348211
Chr.18: 55227689 - 55510772
ENST00000544241
Protein coding
CCDS58627
NM_001243232
Chr.18: 55227855 - 55403995
ENST00000561831
Protein coding
CCDS58623
NM_001348216;NM_001243236
Chr.18: 55227878 - 55302626
ENST00000561992
Protein coding
CCDS58626
NM_001348212;NM_001243233
Chr.18: 55227864 - 55422492
ENST00000562030
Protein coding
Chr.18: 55261528 - 55401525
ENST00000562607
Protein coding
Chr.18: 55269872 - 55401093
ENST00000562680
Retained intron
Chr.18: 55227841 - 55402039
ENST00000563686
Retained intron
Chr.18: 55264596 - 55464137
ENST00000563760
Processed transcript
Chr.18: 55254504 - 55321810
ENST00000564228
Protein coding
CCDS77191
NM_001306208
Chr.18: 55227911 - 55403714
ENST00000564403
Protein coding
CCDS58630
NM_001243228
Chr.18: 55227936 - 55589839
ENST00000564999
Protein coding
CCDS11960
Chr.18: 55226646 - 55588625
ENST00000565018
Protein coding
Chr.18: 55227911 - 55589777
ENST00000566279
Protein coding
Chr.18: 55227911 - 55588617
ENST00000566286
Protein coding
CCDS59321
NM_001243230
Chr.18: 55227911 - 55588535
ENST00000566514
Protein coding
Chr.18: 55269851 - 55585862
ENST00000567880
Protein coding
Chr.18: 55227911 - 55587116
ENST00000568169
Protein coding
Chr.18: 55269924 - 55664787
ENST00000568673
Protein coding
CCDS58629
NM_001348217
Chr.18: 55227679 - 55585908
ENST00000568740
Protein coding
CCDS86672
NM_001348220
Chr.18: 55227846 - 55589806
ENST00000569012
Protein coding
Chr.18: 55269875 - 55401551
ENST00000570177
Protein coding
CCDS58626
Chr.18: 55227984 - 55402240
ENST00000570287
Protein coding
CCDS58625
NM_001348214;NM_001243235
Chr.18: 55226644 - 55321986
ENST00000616053
Protein coding
Chr.18: 55222331 - 55588629
ENST00000626584
Protein coding
Chr.18: 55228225 - 55422356
ENST00000628078
Protein coding
Chr.18: 55260006 - 55404087
ENST00000628636
Protein coding
Chr.18: 55259954 - 55422241
ENST00000629343
Protein coding
Chr.18: 55257362 - 55422268
ENST00000629387
Protein coding
CCDS42438
Chr.18: 55226793 - 55589807
ENST00000630268
Protein coding
Chr.18: 55269898 - 55402206
ENST00000630319
Protein coding
Chr.18: 55269914 - 55585481
ENST00000630720
Protein coding
Chr.18: 55234606 - 55322345
ENST00000630828
Protein coding
Chr.18: 55269858 - 55403764
ENST00000635822
Protein coding
Chr.18: 55222335 - 55588226
ENST00000635990
Processed transcript
Chr.18: 55222335 - 55351316
ENST00000636400
Protein coding
CCDS58629
NM_001348218
Chr.18: 55222334 - 55589778
ENST00000636751
Nonsense mediated decay
Chr.18: 55222335 - 55589846
ENST00000636822
Protein coding
CCDS82255
Chr.18: 55222335 - 55384196
ENST00000637115
Nonsense mediated decay
Chr.18: 55222335 - 55588153
ENST00000637169
Protein coding
CCDS86671
NM_001348215
Chr.18: 55222335 - 55321640
ENST00000637239
Processed transcript
Chr.18: 55222335 - 55553421
ENST00000637250
Processed transcript
Chr.18: 55222335 - 55400917
ENST00000637923
Nonsense mediated decay
Chr.18: 55222335 - 55321694
ENST00000638154
Protein coding
CCDS82257
NM_001330604
Chr.18: 55222335 - 55587204
ENST00000643689
Protein coding
CCDS82255
NM_001348213;NM_001330605
Chr.18: 55222334 - 55352023