COL27A1 Gene Summary [Human]

This gene encodes a member of the fibrillar collagen family, and plays a role during the calcification of cartilage and the transition of cartilage to bone. The encoded protein product is a preproprotein. It includes an N-terminal signal peptide, which is followed by an N-terminal propetide, mature peptide and a C-terminal propeptide. The N-terminal propeptide contains thrombospondin N-terminal-like and laminin G-like domains. The mature peptide is a major triple-helical region. The C-terminal propeptide, also known as COLFI domain, plays crucial roles in tissue growth and repair. Mutations in this gene cause Steel syndrome. Alternatively spliced transcript variants have been found, but the full-length nature of some variants has not been determined. [provided by RefSeq, Sep 2014]

Details

Type
Protein Coding
Official Symbol
COL27A1
Official Name
collagen type XXVII alpha 1 chain [Source:HGNC Symbol;Acc:HGNC:22986]
Ensembl ID
ENSG00000196739
Bio databases IDs NCBI: 85301 Ensembl: ENSG00000196739
Aliases collagen type XXVII alpha 1 chain
Synonyms
5730512J02Rik,collagen, type XXVII, alpha 1,collagen type XXVII alpha 1 chain,collagen, type XXVII, α 1,collagen type XXVII α 1 chain,STLS
Species
Human, Homo sapiens

Protein Domains

A protein domain is a distinct structural or functional region within a protein that can evolve, function, and exist independently of the rest of the protein chain. These domains in human COL27A1 often fold into stable, three-dimensional structures and are associated with specific biological functions, such as binding to DNA, other proteins, or small molecules.
  • Family of unknown function (DUF5585)
  • Fibrillar collagen C-terminal domain
  • LamG
  • extracellular matrix structural constituent
  • Domain of unknown function (DUF4045)
  • Collagen triple helix repeat (20 copies)
  • Metaviral_G glycoprotein

Pathways

Biological processes and signaling networks where the COL27A1 gene in human plays a role, providing insight into its function and relevance in health or disease.

Top Findings

The most significant associations for this gene, including commonly observed domains, pathway involvement, and functional highlights based on current data.
disease
  • burn
  • primary central nervous system lymphoma
  • breast cancer
  • central nervous system cancer
  • lymphomagenesis
  • epithelial cancer
  • Steel syndrome
  • Peyronie disease
  • Tourette syndrome
  • chronic musculoskeletal pain
regulated by
role in cell
  • organization

Subcellular Expression

Locations within the cell where the protein is known or predicted to be active, providing insight into its function and cellular context.
  • Extracellular Space
  • endoplasmic reticulum lumen
  • fibrils

Gene Ontology Annotations

Describes the biological processes, cellular components, and molecular functions associated with the human COL27A1 gene, providing context for its role in the cell.

Biological Process

Functions and activities the gene product is involved in
  • endothelial cell morphogenesis
  • skeletal system development
  • notochord development
  • angiogenesis
  • collagen fibril organization
  • growth plate cartilage chondrocyte development

Cellular Component

Where in the cell the gene product is active
  • endoplasmic reticulum lumen
  • extracellular space
  • collagen
  • fibrillar collagen
  • extracellular region

Molecular Function

What the gene product does at the molecular level
  • metal ion binding
  • extracellular matrix structural constituent conferring tensile strength

Gene-Specific Assays for Results You Can Trust

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