Assay name
HS_CLN6_1341820 QuantiNova LNA PCR Assay
Assay specification
Best coverage assay for CLN6
Assay targets 18 transcripts
Assay spans exon
Pre-designed assay for dPCR and qPCR.
Assay targets 18 transcripts
Assay spans exon
Pre-designed assay for dPCR and qPCR.
Gene symbol
CLN6
Gene aliases
FLJ20561;HsT18960;nclf
Species
Homo sapiens
Main target
ENST00000636674
Exons numbers
3-4
Ensembl exons ids
ENSE00003598267;ENSE00003794718
Amplicon start
1700
Amplicon length
79
Assay targets
Transcript Ensembl Id
Bio Type
Ccds
Ref Seq
Chromosome Location
ENST00000249806
Protein coding
CCDS10227
NM_017882
Chr.15: 68206992 - 68229728
ENST00000538696
Protein coding
Chr.15: 68208067 - 68257106
ENST00000563917
Processed transcript
Chr.15: 68208361 - 68248393
ENST00000564752
Protein coding
Chr.15: 68208327 - 68229709
ENST00000565471
Protein coding
Chr.15: 68207630 - 68229672
ENST00000566347
Protein coding
Chr.15: 68208040 - 68229718
ENST00000567060
Nonsense mediated decay
Chr.15: 68207933 - 68229670
ENST00000635747
Nonsense mediated decay
Chr.15: 68208113 - 68256997
ENST00000636212
Nonsense mediated decay
Chr.15: 68208149 - 68229713
ENST00000636674
Retained intron
Chr.15: 68208173 - 68213143
ENST00000636964
Retained intron
Chr.15: 68207269 - 68213332
ENST00000637329
Nonsense mediated decay
Chr.15: 68207841 - 68218644
ENST00000637450
Nonsense mediated decay
Chr.15: 68208186 - 68229677
ENST00000637667
Protein coding
Chr.15: 68208222 - 68229703
ENST00000637823
Nonsense mediated decay
Chr.15: 68208184 - 68229510
ENST00000638076
Nonsense mediated decay
Chr.15: 68207030 - 68229742
ENST00000638144
Processed transcript
Chr.15: 68208143 - 68248383