Assay name​
HS_PTPN6_1327087 QuantiNova LNA PCR Assay
Assay specification​
Best coverage assay for PTPN6
Assay targets 14 transcripts
Assay spans exon
Pre-designed assay for dPCR and qPCR.
Assay in Focus Panel
Assay targets 14 transcripts
Assay spans exon
Pre-designed assay for dPCR and qPCR.
Assay in Focus Panel
Gene symbol​
PTPN6
Gene aliases​
HCP;HCPH;PTP-1C;SHP-1;SHP1
Species​
Homo sapiens
Main target​
ENST00000539365
Exons numbers​
2-3
Ensembl exons ids​
ENSE00003683562;ENSE00003689730
Amplicon start​
467
Amplicon length​
105
Assay targets​
Transcript Ensembl Id
Bio Type
Ccds
Ref Seq
Chromosome Location
ENST00000318974
Protein coding
CCDS44820
NM_002831
Chr.12: 6951356 - 6961316
ENST00000399448
Protein coding
CCDS41744
NM_080548
Chr.12: 6946577 - 6961316
ENST00000416215
Retained intron
Chr.12: 6951356 - 6961316
ENST00000456013
Protein coding
CCDS44821
NM_080549
Chr.12: 6951271 - 6961316
ENST00000534900
Processed transcript
Chr.12: 6946610 - 6955173
ENST00000535462
Nonsense mediated decay
Chr.12: 6951373 - 6954915
ENST00000536013
Nonsense mediated decay
Chr.12: 6951437 - 6955394
ENST00000538318
Retained intron
Chr.12: 6946710 - 6955267
ENST00000538715
Protein coding
Chr.12: 6951262 - 6954973
ENST00000539365
Retained intron
Chr.12: 6951441 - 6955485
ENST00000542462
Protein coding
Chr.12: 6951375 - 6955189
ENST00000542848
Nonsense mediated decay
Chr.12: 6946574 - 6955262
ENST00000543120
Processed transcript
Chr.12: 6946577 - 6954939
ENST00000545153
Nonsense mediated decay
Chr.12: 6951372 - 6955485