Assay name​
HS_ZEB1_1601461 QuantiNova LNA PCR Assay
Wet-lab validated​
qPCR and dPCR wet-lab validated
Assay specification​
Best coverage assay for ZEB1
Best transcript assay for ENST00000320985
Assay targets 16 transcripts
Assay spans exon
Pre-designed assay for dPCR and qPCR. Wet-lab validated for qPCR and dPCR.
Assay in Focus Panel
Best transcript assay for ENST00000320985
Assay targets 16 transcripts
Assay spans exon
Pre-designed assay for dPCR and qPCR. Wet-lab validated for qPCR and dPCR.
Assay in Focus Panel
Gene symbol​
ZEB1
Gene aliases​
BZP;ZEB;AREB6;NIL-2-A;Zfhep;Zfhx1a;FECD6;TCF8;PPCD3
Species​
Homo sapiens
Main target​
ENST00000320985
Exons numbers​
5-6
Ensembl exons ids​
ENSE00003725201;ENSE00003701577
Amplicon start​
764
Amplicon length​
111
Assay targets​
Transcript Ensembl Id
Bio Type
Ccds
Ref Seq
Chromosome Location
ENST00000320985
Protein coding
CCDS7169
NM_030751;NM_001323677
Chr.10: 31319125 - 31529202
ENST00000361642
Protein coding
CCDS53505
NM_001323643;NM_001323646;NM_001323642;NM_001323645;NM_001323650;NM_001174096;NM_001323661;NM_001323672;NM_001323671;NM_001323673;NM_001323676
Chr.10: 31319172 - 31529813
ENST00000424869
Protein coding
Chr.10: 31319216 - 31520200
ENST00000437844
Nonsense mediated decay
Chr.10: 31319216 - 31529814
ENST00000446923
Protein coding
CCDS44370
NM_001323663;NM_001323662;NM_001323664;NM_001323665;NM_001128128;NM_001174094;NM_001323678
Chr.10: 31321135 - 31529813
ENST00000488625
Retained intron
NM_001323638
Chr.10: 31318495 - 31529202
ENST00000542815
Protein coding
CCDS53507
NM_001323644;NM_001174095;NM_001323658
Chr.10: 31319222 - 31527294
ENST00000542879
Retained intron
Chr.10: 31318818 - 31527276
ENST00000558440
Protein coding
Chr.10: 31319213 - 31520421
ENST00000558655
Retained intron
Chr.10: 31320547 - 31524007
ENST00000558863
Retained intron
Chr.10: 31320113 - 31520811
ENST00000559476
Protein coding
Chr.10: 31321152 - 31520214
ENST00000559858
Processed transcript
Chr.10: 31319212 - 31524007
ENST00000560721
Protein coding
CCDS53506
NM_001323641;NM_001323654;NM_001323651;NM_001323653;NM_001323655;NM_001323652;NM_001323649;NM_001323647;NM_001323648;NM_001174093;NM_001323674;NM_001323657;NM_001323656;NM_001323659;NM_001323660;NM_001323666;NM_001323675
Chr.10: 31319212 - 31527294
ENST00000561061
Processed transcript
Chr.10: 31320606 - 31514707
ENST00000561212
Protein coding
Chr.10: 31320126 - 31520811