Assay name​
HS_HDAC9_1761344 QuantiNova LNA PCR Assay
Wet-lab validated​
qPCR wet-lab validated
Assay specification​
Best coverage assay for HDAC9
Best transcript assay for ENST00000441542
Assay targets 13 transcripts
Assay spans exon
Pre-designed assay for dPCR and qPCR. Wet-lab validated for qPCR.
Assay in Focus Panel
Best transcript assay for ENST00000441542
Assay targets 13 transcripts
Assay spans exon
Pre-designed assay for dPCR and qPCR. Wet-lab validated for qPCR.
Assay in Focus Panel
Gene symbol​
HDAC9
Gene aliases​
KIAA0744;HDAC;MITR;HD7;HDAC7B
Species​
Homo sapiens
Main target​
ENST00000441542
Exons numbers​
1-2
Ensembl exons ids​
ENSE00003663851;ENSE00003643746
Amplicon start​
9
Amplicon length​
72
Assay targets​
Transcript Ensembl Id
Bio Type
Ccds
Ref Seq
Chromosome Location
ENST00000401921
Protein coding
CCDS83163
NM_001321868;NM_001321877;NM_001321897
Chr.7: 18496262 - 18996197
ENST00000405010
Protein coding
CCDS47557
NM_001321869;NM_001321870;NM_001321874;NM_001321876;NM_001321884;NM_001321875;NM_001321878;NM_001321900;NM_001321890;NM_001321899;NM_001321902;NM_001321901;NM_014707
Chr.7: 18495746 - 18668843
ENST00000406072
Protein coding
Chr.7: 18496167 - 18668843
ENST00000406451
Protein coding
CCDS47554
NM_178423
Chr.7: 18495746 - 19002416
ENST00000413380
Protein coding
Chr.7: 18495710 - 18591544
ENST00000413509
Protein coding
Chr.7: 18290422 - 18590486
ENST00000417496
Protein coding
CCDS56465
NM_001204144;NM_001321872;NM_001321873;NM_001321871
Chr.7: 18086949 - 18666923
ENST00000428307
Protein coding
CCDS56466
NM_001321891;NM_001321893;NM_001204145;NM_001321888
Chr.7: 18495756 - 18667105
ENST00000432645
Protein coding
CCDS47555
NM_058176
Chr.7: 18496303 - 18954316
ENST00000441542
Protein coding
CCDS47553
NM_178425
Chr.7: 18496303 - 18996062
ENST00000461159
Retained intron
Chr.7: 18290422 - 18829392
ENST00000523867
Retained intron
Chr.7: 18496303 - 18835649
ENST00000622668
Protein coding
CCDS75565
NM_001321885;NM_001204146;NM_001321879;NM_001321894;NM_001321898;NM_001321895
Chr.7: 18495746 - 18668837