Assay name​
MM_SGCE_1999811 QuantiNova LNA PCR Assay
Wet-lab validated​
qPCR wet-lab validated
Assay specification​
Best coverage assay for Sgce
Assay targets 11 transcripts
Assay spans exon
Pre-designed assay for dPCR and qPCR. Wet-lab validated for qPCR.
Assay in Focus Panel
Assay targets 11 transcripts
Assay spans exon
Pre-designed assay for dPCR and qPCR. Wet-lab validated for qPCR.
Assay in Focus Panel
Gene symbol​
Sgce
Species​
Mus musculus
Main target​
ENSMUST00000128109
Exons numbers​
3-4
Ensembl exons ids​
ENSMUSE00001300306;ENSMUSE00001274964
Amplicon start​
289
Amplicon length​
116
Assay targets​
Transcript Ensembl Id
Bio Type
Ccds
Ref Seq
Chromosome Location
ENSMUST00000004750
Protein coding
CCDS85013
NM_001130189
Chr.6: 4674354 - 4747207
ENSMUST00000090686
Protein coding
Chr.6: 4674384 - 4747116
ENSMUST00000101677
Protein coding
CCDS51715
NM_001130191
Chr.6: 4674418 - 4747188
ENSMUST00000115577
Protein coding
CCDS51718
NM_001130188
Chr.6: 4674350 - 4747176
ENSMUST00000115579
Protein coding
CCDS51716
NM_011360
Chr.6: 4674350 - 4747204
ENSMUST00000123907
Nonsense mediated decay
Chr.6: 4691600 - 4747063
ENSMUST00000126151
Protein coding
Chr.6: 4674354 - 4747157
ENSMUST00000128109
Retained intron
Chr.6: 4688612 - 4747080
ENSMUST00000133306
Protein coding
CCDS51717
NM_001130190
Chr.6: 4674418 - 4747124
ENSMUST00000139029
Processed transcript
Chr.6: 4691428 - 4747070
ENSMUST00000153284
Retained intron
Chr.6: 4677710 - 4747157