RT1-Ba Gene Summary [Rat]

Predicted to enable MHC class II protein complex binding activity and peptide antigen binding activity. Involved in cellular response to glucocorticoid stimulus and negative regulation of T cell proliferation. Predicted to be located in external side of plasma membrane and lysosome. Predicted to be part of MHC class II protein complex. Predicted to be active in late endosome membrane and lysosomal membrane. Used to study uveitis. Human ortholog(s) of this gene implicated in several diseases, including autoimmune disease (multiple); gastrointestinal system cancer (multiple); glomerulonephritis (multiple); hematologic cancer (multiple); and systemic scleroderma (multiple). Orthologous to human HLA-DQA1 (major histocompatibility complex, class II, DQ alpha 1) and HLA-DQA2 (major histocompatibility complex, class II, DQ alpha 2). [provided by Alliance of Genome Resources, Apr 2025]

Details

Type
Nonsense Mediated Decay
Official Symbol
RT1-Ba
Official Name
RT1 class II, locus Ba [Source:RGD Symbol;Acc:1595867]
Ensembl ID
ENSRNOG00000000451
Bio databases IDs NCBI: 309621 Ensembl: ENSRNOG00000000451
Aliases RT1 class II, locus Ba
Synonyms BA1, HLA-DQA1, MHC class II alpha chain RT1.D alpha, MHC class II α chain RT1.D α, RT1 class II, locus Ba
Species
Rat, Rattus norvegicus

Protein Domains

A protein domain is a distinct structural or functional region within a protein that can evolve, function, and exist independently of the rest of the protein chain. These domains in rat Rt1-Ba often fold into stable, three-dimensional structures and are associated with specific biological functions, such as binding to DNA, other proteins, or small molecules.
  • Immunoglobulin C1-set domain
  • binding protein
  • immunoglobulin domain
  • Class II histocompatibility antigen, alpha domain
  • peptide antigen binding

Pathways

Biological processes and signaling networks where the Rt1-Ba gene in rat plays a role, providing insight into its function and relevance in health or disease.

Top Findings

The most significant associations for this gene, including commonly observed domains, pathway involvement, and functional highlights based on current data.
regulated by
  • IFNG
  • beta-estradiol
  • genistein
  • TSH
  • JAK1/2
  • mibolerone
  • daidzein
  • aflatoxin B1
  • SNCA
phenotypes
  • Amyopathic Dermatomyositis
  • Aspirin-Induced Asthma
  • Autoimmune Diseases
  • Delayed Hypersensitivity
  • Discoid Lupus Erythematosus
  • Drug Eruptions
  • Experimental Autoimmune Encephalomyelitis
  • Graves Disease
  • Hashimoto Disease
  • Hearing Loss Sudden
  • Helicobacter Infections
  • Henoch-Schoenlein purpura
  • Nasal Polyps
  • Pseudomonas Infections
  • Sjogren's Syndrome
  • Stroke
  • Tubulointerstitial Nephritis and Uveitis
  • Vogt-Koyanagi-Harada disease
  • abdominal aortic aneurysm
  • achalasia
  • allergic hypersensitivity disease
  • Alopecia Areata
  • ankylosing spondylitis
  • Antiphospholipid Syndrome
  • aplastic anemia
  • Arthritis
  • asthma
  • autoimmune polyendocrine syndrome
  • autoimmune polyendocrine syndrome type 2
  • autoimmune thyroiditis
  • Brain Infarction
  • breast cancer
  • Celiac Disease
  • choreatic disease
  • chronic fatigue syndrome
  • chronic myeloid leukemia
  • diffuse scleroderma
  • dilated cardiomyopathy 1H
  • factor VIII deficiency
  • Glucose Intolerance
  • human immunodeficiency virus infectious disease
  • hypertension
  • juvenile rheumatoid arthritis
  • marginal zone B-cell lymphoma
  • melanoma
  • membranous glomerulonephritis
  • Multiple Sclerosis
  • Myasthenia Gravis
  • Myositis
  • Narcolepsy
  • Onchocerciasis
  • paroxysmal nocturnal hemoglobinuria
  • Pemphigus
  • precursor lymphoblastic lymphoma/leukemia
  • psoriasis
  • Rheumatic Fever
  • Rheumatic Heart Disease
  • rheumatoid arthritis
  • Rhinitis
  • Rhinoscleroma
  • systemic scleroderma
  • Thrombophilia
  • type 1 diabetes mellitus
  • type 2 diabetes mellitus
  • Uveitis
  • Vitiligo
  • Chemical and Drug Induced Liver Injury
  • Hepatitis B Chronic
  • Hepatitis C Chronic
  • Schistosomiasis Japonica
  • Sudden Hearing Loss
  • Hepatitis B
  • Hepatitis C
  • hepatocellular carcinoma
  • Liver Cirrhosis
  • primary biliary cirrhosis
  • Chronic Hepatitis B
  • Chronic Hepatitis C
  • acute lymphoblastic leukemia
  • aspirin-induced respiratory disease
  • autoimmune disease
  • primary biliary cholangitis
role in cell
  • proliferation

Subcellular Expression

Locations within the cell where the protein is known or predicted to be active, providing insight into its function and cellular context.
  • Plasma Membrane
  • lysosome
  • plasma membrane extracellular face

Gene-Specific Assays for Results You Can Trust

Streamline your workflow with assays designed for this gene. Our targeted dPCR and qPCR assays help you generate meaningful data – efficiently and accurately.