Scn2a Gene Summary [Rat]

Voltage-gated sodium channels are transmembrane glycoprotein complexes composed of a large alpha subunit with four repeat domains, each of which is composed of six membrane-spanning segments, and one or more regulatory beta subunits. Voltage-gated sodium channels are responsible for the generation and propagation of action potentials in neurons and muscle. This gene encodes one member of the sodium channel alpha subunit gene family. In humans, variants of this gene are associated with seizure disorders and autism spectrum disorder. Mice homozygous for a knockout mutation die with severe hypoxia and extensive neuronal cell death, while gain of function mutations result in progressive seizure disorder. [provided by RefSeq, Nov 2016]

Details

Type
Protein Coding
Official Symbol
Scn2a
Official Name
sodium voltage-gated channel alpha subunit 2 [Source:RGD Symbol;Acc:3632]
Ensembl ID
ENSRNOG00000005018
Bio databases IDs NCBI: 24766 Ensembl: ENSRNOG00000005018
Aliases sodium voltage-gated channel alpha subunit 2
Synonyms 6430408L10, A230052E19RIK, alpha-2 SODIUM CHANNEL subunit, BFIC3, BFIS3, BFNIS, DEE11, DKFZp761D191, EA9, EIEE11, HBA, HBSCI, HBSCII, NAC2, NACH, NachII, Na(v)1.2, NAV1.2, RII/RIIA, RNSCPIIR, SCN, SCN2A1, SCN2A2, ScpII, sodium channel, voltage-gated, type II, alpha, sodium channel, voltage-gated, type II, α, sodium voltage-gated channel alpha subunit 2, sodium voltage-gated channel α subunit 2, Vsnac Type 2a, α-2a sodium channel subunit, α-2 SODIUM CHANNEL subunit
Species
Rat, Rattus norvegicus
OrthologiesHumanMouse

Protein Domains

A protein domain is a distinct structural or functional region within a protein that can evolve, function, and exist independently of the rest of the protein chain. These domains in rat Scn2a often fold into stable, three-dimensional structures and are associated with specific biological functions, such as binding to DNA, other proteins, or small molecules.
  • Voltage-dependent L-type calcium channel, IQ-associated
  • voltage sensor segment
  • intracellular loop
  • Cytoplasmic domain of voltage-gated Na+ ion channel
  • sodium channel
  • Ion transport protein
  • calmodulin binding
  • cytoplasmic linker
  • LRR-domain binding
  • metal ion binding
  • protein binding
  • ion channel
  • Sodium ion transport-associated
  • voltage-gated sodium channel
  • axon targeting domain
  • voltage-gated ion channel
  • Polycystin cation channel

Pathways

Biological processes and signaling networks where the Scn2a gene in rat plays a role, providing insight into its function and relevance in health or disease.

Top Findings

The most significant associations for this gene, including commonly observed domains, pathway involvement, and functional highlights based on current data.
disease
  • non-insulin-dependent diabetes mellitus
  • weight gain
  • metabolic syndrome X
  • early infantile epileptic encephalopathy type 11
  • benign familial infantile seizures 3
  • hereditary disorder
  • Parkinson disease
  • Ohtahara syndrome
  • episodic ataxia type 9
  • mental retardation
regulated by
regulates
  • Ca2+
  • Na+
  • ERK1/2
  • calmodulin
  • sodium channel
  • hemoglobin
  • PRNP
role in cell
  • apoptosis
  • action potential
  • response by
  • neuronal bursting in
  • firing in
  • intrinsic excitability

Subcellular Expression

Locations within the cell where the protein is known or predicted to be active, providing insight into its function and cellular context.
  • Plasma Membrane
  • detergent-soluble membrane fractions
  • glutaminergic synapse
  • axon component
  • cellular membrane
  • intercellular junctions
  • presynaptic membrane
  • nodes of Ranvier
  • transverse tubules
  • perikaryon
  • axons
  • dendrites

Gene Ontology Annotations

Describes the biological processes, cellular components, and molecular functions associated with the rat Scn2a gene, providing context for its role in the cell.

Biological Process

Functions and activities the gene product is involved in
  • regulation of cardiac muscle cell action potential involved in contraction
  • determination of adult lifespan
  • nervous system development
  • myelination
  • memory
  • dentate gyrus development
  • nerve development
  • sodium ion transport
  • induction of apoptosis by ionic changes
  • sodium ion transmembrane transport
  • cellular response to hypoxia
  • neuron apoptotic process
  • regulation of action potential in neuron

Cellular Component

Where in the cell the gene product is active
  • presynaptic membrane
  • T-tubule
  • paranode region of axon
  • membrane
  • intercalated disc
  • node of Ranvier
  • voltage-gated sodium channel complex
  • plasma membrane
  • axon

Molecular Function

What the gene product does at the molecular level
  • calmodulin binding
  • protein binding
  • voltage-gated sodium channel activity

Gene-Specific Assays for Results You Can Trust

Streamline your workflow with assays designed for this gene. Our targeted dPCR and qPCR assays help you generate meaningful data – efficiently and accurately.