CLEC4M Gene Summary [Human]

This gene encodes a C-type lectin that functions in cell adhesion and pathogen recognition. This receptor recognizes a wide range of evolutionarily divergent pathogens with a large impact on public health, including tuberculosis mycobacteria, and viruses including Ebola, hepatitis C, HIV-1, influenza A, West Nile virus and the SARS-CoV acute respiratory syndrome coronavirus. The protein is organized into four distinct domains: a C-terminal carbohydrate recognition domain, a flexible tandem-repeat neck domain of variable length, a transmembrane region and an N-terminal cytoplasmic domain involved in internalization. This gene is closely related in terms of both sequence and function to a neighboring gene, CD209 (Gene ID: 30835), also known as DC-SIGN. The two genes differ in viral recognition and expression patterns, with this gene showing high expression in endothelial cells of the liver, lymph node and placenta. Polymorphisms in the tandem repeat neck domain are associated with resistance to SARS infection. [provided by RefSeq, May 2020]

Details

Type
Protein Coding
Official Symbol
CLEC4M
Official Name
C-type lectin domain family 4 member M [Source:HGNC Symbol;Acc:HGNC:13523]
Ensembl ID
ENSG00000104938
Bio databases IDs NCBI: 10332 Ensembl: ENSG00000104938
Aliases C-type lectin domain family 4 member M
Synonyms CD209L, CD209L1, CD299, C-type lectin domain family 4 member M, DC-SIGN2, DC-SIGNR, HP10347, LIVER/LYMPH NODE SIGN, L-SIGN
Species
Human, Homo sapiens

Protein Domains

A protein domain is a distinct structural or functional region within a protein that can evolve, function, and exist independently of the rest of the protein chain. These domains in human CLEC4M often fold into stable, three-dimensional structures and are associated with specific biological functions, such as binding to DNA, other proteins, or small molecules.
  • calcium-dependent protein binding
  • extracellular domain
  • virion binding
  • dileucine internalization motif
  • viral receptor
  • C-type lectin (CTL)/C-type lectin-like (CTLD) domain
  • carbohydrate recognition domain
  • Lectin C-type domain
  • protein binding
  • cytosolic tail domain

Top Findings

The most significant associations for this gene, including commonly observed domains, pathway involvement, and functional highlights based on current data.
binds
disease
  • infection
  • epithelial cancer
  • hepatocellular carcinoma
  • liver cancer
  • venous thromboembolism
  • coronary artery disease
  • hepatitis B virus-related hepatocellular carcinoma
  • ischemic stroke
  • infection by Reston ebolavirus
  • infection by lentivirus
regulated by
regulates
role in cell
  • activation
  • production in
  • migration
  • binding
  • viral entry
  • transduction
  • transfection
  • entrance
  • transport in
  • interaction

Subcellular Expression

Locations within the cell where the protein is known or predicted to be active, providing insight into its function and cellular context.
  • Plasma Membrane
  • cell surface
  • Extracellular Space
  • cellular membrane

Gene Ontology Annotations

Describes the biological processes, cellular components, and molecular functions associated with the human CLEC4M gene, providing context for its role in the cell.

Biological Process

Functions and activities the gene product is involved in
  • viral entry into host cell
  • interspecies interaction between organisms
  • adaptive immune response
  • virion attachment, binding of host cell surface receptor
  • peptide antigen transport
  • cell-cell recognition
  • leukocyte cell-cell adhesion
  • immune response
  • viral attachment to host cell
  • viral entry into host cell via receptor-mediated endocytosis
  • innate immune response
  • antigen processing and presentation
  • viral genome replication
  • intracellular signal transduction

Cellular Component

Where in the cell the gene product is active
  • cytoplasm
  • membrane
  • external side of plasma membrane
  • extracellular region
  • host cell
  • plasma membrane

Molecular Function

What the gene product does at the molecular level
  • virion binding
  • mannose binding
  • protein binding
  • peptide antigen binding
  • metal ion binding
  • signaling receptor activity
  • calcium-dependent protein binding
  • viral receptor activity
  • carbohydrate binding
  • ICAM-3 receptor activity

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