Assay name​
HS_HIF3A_1245053 QuantiNova LNA PCR Assay
Assay specification​
Best coverage assay for HIF3A
Assay targets 11 transcripts
Assay spans exon
Pre-designed assay for dPCR and qPCR.
Assay in Focus Panel
Assay targets 11 transcripts
Assay spans exon
Pre-designed assay for dPCR and qPCR.
Assay in Focus Panel
Gene symbol​
HIF3A
Gene aliases​
IPAS;MOP7;PASD7;bHLHe17
Species​
Homo sapiens
Main target​
ENST00000528563
Exons numbers​
6-7
Ensembl exons ids​
ENSE00003538936;ENSE00003546491
Amplicon start​
835
Amplicon length​
69
Assay targets​
Transcript Ensembl Id
Bio Type
Ccds
Ref Seq
Chromosome Location
ENST00000244302
Retained intron
Chr.19: 46297046 - 46331513
ENST00000244303
Protein coding
CCDS42580
NM_022462
Chr.19: 46298390 - 46339909
ENST00000291300
Retained intron
Chr.19: 46298458 - 46331513
ENST00000300862
Protein coding
CCDS12682
NM_152794
Chr.19: 46303599 - 46340100
ENST00000377670
Protein coding
CCDS12681
NM_152795
Chr.19: 46297046 - 46343433
ENST00000472815
Protein coding
NM_152796
Chr.19: 46298426 - 46338538
ENST00000475432
Retained intron
Chr.19: 46297046 - 46313363
ENST00000525854
Processed transcript
Chr.19: 46305042 - 46312518
ENST00000528563
Nonsense mediated decay
Chr.19: 46298394 - 46325594
ENST00000531043
Nonsense mediated decay
Chr.19: 46309221 - 46312653
ENST00000600383
Protein coding
Chr.19: 46303849 - 46338538