Assay name
HS_CLN3_1314458 QuantiNova LNA PCR Assay
Wet-lab validated
qPCR wet-lab validated
Assay specification
Best coverage assay for CLN3
Best transcript assay for ENST00000359984
Assay targets 29 transcripts
Assay spans exon
Pre-designed assay for dPCR and qPCR. Wet-lab validated for qPCR.
Assay in Focus Panel
Best transcript assay for ENST00000359984
Assay targets 29 transcripts
Assay spans exon
Pre-designed assay for dPCR and qPCR. Wet-lab validated for qPCR.
Assay in Focus Panel
Gene symbol
CLN3
Gene aliases
JNCL;BTN1;BTS
Species
Homo sapiens
Main target
ENST00000359984
Exons numbers
4-5
Ensembl exons ids
ENSE00003805432;ENSE00003811332
Amplicon start
599
Amplicon length
58
Assay targets
Transcript Ensembl Id
Bio Type
Ccds
Ref Seq
Chromosome Location
ENST00000355477
Protein coding
Chr.16: 28477516 - 28491759
ENST00000357857
Protein coding
CCDS73854
NM_001286105;NM_001286110
Chr.16: 28477280 - 28492005
ENST00000359984
Protein coding
CCDS10632
NM_000086
Chr.16: 28477272 - 28492074
ENST00000561689
Retained intron
Chr.16: 28477289 - 28492044
ENST00000563874
Retained intron
Chr.16: 28477280 - 28494576
ENST00000564574
Retained intron
Chr.16: 28482178 - 28492070
ENST00000565140
Nonsense mediated decay
Chr.16: 28477516 - 28491759
ENST00000565316
Protein coding
Chr.16: 28477464 - 28491759
ENST00000566083
Retained intron
Chr.16: 28482512 - 28492248
ENST00000566824
Retained intron
Chr.16: 28477790 - 28491739
ENST00000567495
Nonsense mediated decay
Chr.16: 28484076 - 28492065
ENST00000567963
Protein coding
CCDS73854
Chr.16: 28477433 - 28492074
ENST00000568076
Retained intron
Chr.16: 28477294 - 28492070
ENST00000568422
Nonsense mediated decay
Chr.16: 28477521 - 28491832
ENST00000568443
Protein coding
Chr.16: 28486578 - 28492042
ENST00000568452
Retained intron
Chr.16: 28477448 - 28492046
ENST00000569030
Nonsense mediated decay
Chr.16: 28477516 - 28491759
ENST00000569430
Protein coding
CCDS10632
Chr.16: 28477294 - 28495550
ENST00000631023
Protein coding
Chr.16: 28477279 - 28492082
ENST00000635958
Retained intron
Chr.16: 28477403 - 28492054
ENST00000636147
Protein coding
CCDS10632
NM_001042432
Chr.16: 28475351 - 28492293
ENST00000636228
Protein coding
Chr.16: 28477483 - 28491856
ENST00000636351
Retained intron
Chr.16: 28477331 - 28488604
ENST00000636839
Retained intron
Chr.16: 28477311 - 28492095
ENST00000636853
Retained intron
Chr.16: 28477557 - 28491835
ENST00000637100
Protein coding
Chr.16: 28474111 - 28492070
ENST00000637184
Nonsense mediated decay
Chr.16: 28477306 - 28492047
ENST00000637699
Nonsense mediated decay
Chr.16: 28477516 - 28491759
ENST00000637985
Nonsense mediated decay
Chr.16: 28486389 - 28491790