Assay name​
HS_CD44_1318778 QuantiNova LNA PCR Assay
Wet-lab validated​
qPCR and dPCR wet-lab validated
Assay specification​
Best coverage assay for CD44
Best transcript assay for ENST00000428726
Assay targets 9 transcripts
Assay spans exon
Pre-designed assay for dPCR and qPCR. Wet-lab validated for qPCR and dPCR.
Assay in Focus Panel
Best transcript assay for ENST00000428726
Assay targets 9 transcripts
Assay spans exon
Pre-designed assay for dPCR and qPCR. Wet-lab validated for qPCR and dPCR.
Assay in Focus Panel
Gene symbol​
CD44
Gene aliases​
IN;MC56;Pgp1;CD44R;HCELL;CSPG8;MIC4;MDU2;MDU3
Species​
Homo sapiens
Main target​
ENST00000428726
Exons numbers​
12-13
Ensembl exons ids​
ENSE00003790928;ENSE00000710485
Amplicon start​
1914
Amplicon length​
70
Assay targets​
Transcript Ensembl Id
Bio Type
Ccds
Ref Seq
Chromosome Location
ENST00000278385
Protein coding
Chr.11: 35189891 - 35229244
ENST00000415148
Protein coding
CCDS31455
NM_001001389
Chr.11: 35139170 - 35229468
ENST00000428726
Protein coding
CCDS7897
NM_000610
Chr.11: 35138870 - 35232402
ENST00000433892
Protein coding
CCDS31456
NM_001001390
Chr.11: 35139188 - 35230027
ENST00000525685
Protein coding
Chr.11: 35186862 - 35211257
ENST00000526553
Protein coding
Chr.11: 35201083 - 35211253
ENST00000528672
Protein coding
Chr.11: 35201679 - 35211401
ENST00000531110
Protein coding
Chr.11: 35186843 - 35211309
ENST00000533222
Protein coding
Chr.11: 35189900 - 35211342