Assay name
HS_SS18_1324978 QuantiNova LNA PCR Assay
Assay specification
Best coverage assay for SS18
Assay targets 19 transcripts
Assay spans exon
Pre-designed assay for dPCR and qPCR.
Assay targets 19 transcripts
Assay spans exon
Pre-designed assay for dPCR and qPCR.
Gene symbol
SS18
Gene aliases
SYT;SMARCL1;SSXT
Species
Homo sapiens
Main target
ENST00000542420
Exons numbers
2-3
Ensembl exons ids
ENSE00003559040;ENSE00003511849
Amplicon start
160
Amplicon length
86
Assay targets
Transcript Ensembl Id
Bio Type
Ccds
Ref Seq
Chromosome Location
ENST00000269137
Protein coding
CCDS54183
NM_005637
Chr.18: 26018014 - 26090901
ENST00000415083
Protein coding
CCDS32807
NM_001007559
Chr.18: 26016253 - 26090613
ENST00000542420
Protein coding
CCDS77168
NM_001308201
Chr.18: 26017343 - 26091217
ENST00000577572
Nonsense mediated decay
Chr.18: 26057699 - 26090625
ENST00000577636
Nonsense mediated decay
Chr.18: 26052743 - 26091192
ENST00000577751
Processed transcript
Chr.18: 26064832 - 26090135
ENST00000578700
Nonsense mediated decay
Chr.18: 26052823 - 26091216
ENST00000578954
Nonsense mediated decay
Chr.18: 26052682 - 26090652
ENST00000579061
Protein coding
Chr.18: 26052705 - 26091192
ENST00000579640
Nonsense mediated decay
Chr.18: 26017885 - 26090610
ENST00000580642
Nonsense mediated decay
Chr.18: 26078103 - 26090625
ENST00000580751
Nonsense mediated decay
Chr.18: 26078076 - 26090625
ENST00000581021
Protein coding
Chr.18: 26057695 - 26090135
ENST00000581570
Nonsense mediated decay
Chr.18: 26057732 - 26090608
ENST00000582448
Nonsense mediated decay
Chr.18: 26057719 - 26091192
ENST00000582792
Nonsense mediated decay
Chr.18: 26057612 - 26090597
ENST00000584083
Protein coding
Chr.18: 26052771 - 26090096
ENST00000585121
Nonsense mediated decay
Chr.18: 26018120 - 26090597
ENST00000585241
Processed transcript
Chr.18: 26039410 - 26090625