Assay name
HS_HMGN1_1336854 QuantiNova LNA PCR Assay
Assay specification
Best coverage assay for HMGN1
Assay targets 15 transcripts
Assay spans exon
Pre-designed assay for dPCR and qPCR.
Assay targets 15 transcripts
Assay spans exon
Pre-designed assay for dPCR and qPCR.
Gene symbol
HMGN1
Gene aliases
FLJ27265;FLJ31471;MGC104230;MGC117425;HMG14
Species
Homo sapiens
Main target
ENST00000492280
Exons numbers
7-8
Ensembl exons ids
ENSE00003669232;ENSE00001942976
Amplicon start
1846
Amplicon length
72
Assay targets
Transcript Ensembl Id
Bio Type
Ccds
Ref Seq
Chromosome Location
ENST00000288344
Nonsense mediated decay
Chr.21: 39342315 - 39348991
ENST00000380747
Protein coding
Chr.21: 39342879 - 39349647
ENST00000380748
Protein coding
Chr.21: 39342692 - 39349053
ENST00000380749
Protein coding
CCDS33559
NM_004965
Chr.21: 39342315 - 39349088
ENST00000419378
Nonsense mediated decay
Chr.21: 39342788 - 39349040
ENST00000431390
Nonsense mediated decay
Chr.21: 39342315 - 39349140
ENST00000436324
Nonsense mediated decay
Chr.21: 39342646 - 39349088
ENST00000443046
Nonsense mediated decay
Chr.21: 39343009 - 39349054
ENST00000482192
Processed transcript
Chr.21: 39342804 - 39348623
ENST00000485550
Processed transcript
Chr.21: 39342909 - 39348597
ENST00000486741
Retained intron
Chr.21: 39342315 - 39349099
ENST00000489072
Processed transcript
Chr.21: 39342800 - 39348862
ENST00000490032
Processed transcript
Chr.21: 39342978 - 39348339
ENST00000492280
Retained intron
Chr.21: 39342315 - 39349344
ENST00000652622
Nonsense mediated decay
Chr.21: 39342338 - 39349011