Assay name​
HS_SCN1A_1428323 QuantiNova LNA PCR Assay
Assay specification​
Best coverage assay for SCN1A
Assay targets 14 transcripts
Assay spans exon
Pre-designed assay for dPCR and qPCR.
Assay in Focus Panel
Assay targets 14 transcripts
Assay spans exon
Pre-designed assay for dPCR and qPCR.
Assay in Focus Panel
Gene symbol​
SCN1A
Gene aliases​
Nav1.1;GEFSP2;HBSCI;NAC1;SMEI;SCN1;FEB3
Species​
Homo sapiens
Main target​
ENST00000641575
Exons numbers​
11-12
Ensembl exons ids​
ENSE00001129686;ENSE00002471795
Amplicon start​
1605
Amplicon length​
77
Assay targets​
Transcript Ensembl Id
Bio Type
Ccds
Ref Seq
Chromosome Location
ENST00000303395
Protein coding
CCDS54413
NM_001202435;NM_001353948;NM_001353961;NM_001165963
Chr.2: 165989160 - 166128047
ENST00000375405
Protein coding
CCDS33316
NM_001353951
Chr.2: 165989163 - 166073639
ENST00000409050
Protein coding
CCDS54414
NM_001353958;NM_001353957;NM_001353960;NM_001165964
Chr.2: 165991245 - 166073621
ENST00000423058
Protein coding
Chr.2: 165989160 - 166073697
ENST00000635750
Protein coding
CCDS33316
NM_001353949;NM_001353950
Chr.2: 165989160 - 166149214
ENST00000635776
Protein coding
Chr.2: 165989160 - 166128023
ENST00000636194
Nonsense mediated decay
Chr.2: 165989160 - 166128039
ENST00000636759
Nonsense mediated decay
Chr.2: 166037776 - 166128015
ENST00000637968
Retained intron
Chr.2: 166009359 - 166127034
ENST00000637988
Protein coding
CCDS33316
NM_001353952;NM_006920
Chr.2: 165989160 - 166128022
ENST00000640036
Protein coding
Chr.2: 165989160 - 166073670
ENST00000641575
Protein coding
CCDS86891
NM_001353955;NM_001353954
Chr.2: 165984641 - 166149135
ENST00000641603
Protein coding
Chr.2: 165984641 - 166149151
ENST00000641996
Nonsense mediated decay
Chr.2: 165984641 - 166127986