Assay name
HS_CASK_1432422 QuantiNova LNA PCR Assay
Assay specification
Best coverage assay for CASK
Assay targets 17 transcripts
Assay spans exon
Pre-designed assay for dPCR and qPCR.
Assay in Focus Panel
Assay targets 17 transcripts
Assay spans exon
Pre-designed assay for dPCR and qPCR.
Assay in Focus Panel
Gene symbol
CASK
Gene aliases
LIN2;CAGH39;FGS4;TNRC8
Species
Homo sapiens
Main target
ENST00000644347
Exons numbers
15-16
Ensembl exons ids
ENSE00001091537;ENSE00001091536
Amplicon start
1731
Amplicon length
74
Assay targets
Transcript Ensembl Id
Bio Type
Ccds
Ref Seq
Chromosome Location
ENST00000378154
Protein coding
Chr.X: 41519554 - 41923645
ENST00000378158
Protein coding
Chr.X: 41519549 - 41923144
ENST00000378163
Protein coding
Chr.X: 41519265 - 41923475
ENST00000378166
Protein coding
Chr.X: 41519897 - 41923030
ENST00000378168
Protein coding
Chr.X: 41519608 - 41586951
ENST00000378179
Protein coding
Chr.X: 41519227 - 41590082
ENST00000421587
Protein coding
CCDS48095
NM_001126054
Chr.X: 41514951 - 41923007
ENST00000442742
Protein coding
Chr.X: 41519478 - 41923161
ENST00000472704
Processed transcript
Chr.X: 41552588 - 41578453
ENST00000643043
Protein coding
Chr.X: 41531184 - 41665847
ENST00000644219
Protein coding
Chr.X: 41517308 - 41923161
ENST00000644347
Protein coding
CCDS48094
NM_001126055
Chr.X: 41514934 - 41923169
ENST00000645566
Protein coding
CCDS14257
NM_003688
Chr.X: 41519211 - 41923015
ENST00000645937
Retained intron
Chr.X: 41534706 - 41588520
ENST00000645986
Protein coding
Chr.X: 41519295 - 41923195
ENST00000646087
Protein coding
Chr.X: 41519237 - 41923171
ENST00000646120
Protein coding
Chr.X: 41519221 - 41923048