Assay name
HS_HLA-DQA1_1439389 QuantiNova LNA PCR Assay
Assay specification
Best coverage assay for HLA-DQA1
Assay targets 9 transcripts
Assay spans exon
Pre-designed assay for dPCR and qPCR.
Assay targets 9 transcripts
Assay spans exon
Pre-designed assay for dPCR and qPCR.
Gene symbol
HLA-DQA1
Species
Homo sapiens
Main target
ENST00000456258
Exons numbers
2-3
Ensembl exons ids
ENSE00003474324;ENSE00003673346
Amplicon start
362
Amplicon length
94
Assay targets
Transcript Ensembl Id
Bio Type
Ccds
Ref Seq
Chromosome Location
ENST00000420385
Protein coding
Chr.CHR_HSCHR6_MHC_MCF_CTG1: 32672895 - 32678384
ENST00000441297
Protein coding
NM_002122
Chr.CHR_HSCHR6_MHC_MCF_CTG1: 32672875 - 32679070
ENST00000450614
Protein coding
Chr.CHR_HSCHR6_MHC_MCF_CTG1: 32672870 - 32679070
ENST00000456258
Protein coding
Chr.CHR_HSCHR6_MHC_MCF_CTG1: 32672826 - 32679070
ENST00000463379
Processed transcript
Chr.CHR_HSCHR6_MHC_MCF_CTG1: 32672893 - 32677669
ENST00000474698
Retained intron
Chr.CHR_HSCHR6_MHC_MCF_CTG1: 32672900 - 32684403
ENST00000481936
Processed transcript
Chr.CHR_HSCHR6_MHC_MCF_CTG1: 32676707 - 32678690
ENST00000484643
Nonsense mediated decay
Chr.CHR_HSCHR6_MHC_MCF_CTG1: 32672896 - 32678690
ENST00000486605
Processed transcript
Chr.CHR_HSCHR6_MHC_MCF_CTG1: 32672875 - 32678393