Assay name​
HS_ATG4B_1610062 QuantiNova LNA PCR Assay
Wet-lab validated​
qPCR wet-lab validated
Assay specification​
Best coverage assay for ATG4B
Best transcript assay for ENST00000400771
Assay targets 18 transcripts
Assay spans exon
Pre-designed assay for dPCR and qPCR. Wet-lab validated for qPCR.
Assay in Focus Panel
Best transcript assay for ENST00000400771
Assay targets 18 transcripts
Assay spans exon
Pre-designed assay for dPCR and qPCR. Wet-lab validated for qPCR.
Assay in Focus Panel
Gene symbol​
ATG4B
Gene aliases​
Apg4B;KIAA0943;DKFZp586D1822;AUTL1;APG4B
Species​
Homo sapiens
Main target​
ENST00000400771
Exons numbers​
4-5
Ensembl exons ids​
ENSE00003612787;ENSE00003655433
Amplicon start​
239
Amplicon length​
99
Assay targets​
Transcript Ensembl Id
Bio Type
Ccds
Ref Seq
Chromosome Location
ENST00000344376
Nonsense mediated decay
Chr.2: 241651007 - 241672592
ENST00000400771
Protein coding
Chr.2: 241637710 - 241668221
ENST00000400772
Nonsense mediated decay
Chr.2: 241637626 - 241655330
ENST00000402096
Protein coding
Chr.2: 241637612 - 241672628
ENST00000404914
Protein coding
CCDS46564
NM_013325
Chr.2: 241637693 - 241673857
ENST00000405546
Protein coding
CCDS46565
NM_178326
Chr.2: 241637213 - 241673854
ENST00000419606
Protein coding
Chr.2: 241637693 - 241655306
ENST00000425239
Protein coding
Chr.2: 241637707 - 241659448
ENST00000429899
Protein coding
Chr.2: 241653467 - 241666769
ENST00000430617
Protein coding
Chr.2: 241637729 - 241659187
ENST00000465399
Retained intron
Chr.2: 241637693 - 241655444
ENST00000468018
Retained intron
Chr.2: 241637697 - 241659200
ENST00000475195
Retained intron
Chr.2: 241637693 - 241655002
ENST00000479554
Retained intron
Chr.2: 241637693 - 241654705
ENST00000482507
Retained intron
Chr.2: 241637698 - 241672631
ENST00000483778
Retained intron
Chr.2: 241637662 - 241659772
ENST00000493618
Retained intron
Chr.2: 241637706 - 241659611
ENST00000494465
Retained intron
Chr.2: 241637635 - 241672599