Assay name
HS_HDAC6_1614515 QuantiNova LNA PCR Assay
Wet-lab validated
qPCR wet-lab validated
Assay specification
Best coverage assay for HDAC6
Best transcript assay for ENST00000334136
Assay targets 13 transcripts
Assay spans exon
Pre-designed assay for dPCR and qPCR. Wet-lab validated for qPCR.
Assay in Focus Panel
Best transcript assay for ENST00000334136
Assay targets 13 transcripts
Assay spans exon
Pre-designed assay for dPCR and qPCR. Wet-lab validated for qPCR.
Assay in Focus Panel
Gene symbol
HDAC6
Gene aliases
KIAA0901;JM21;HD6;FLJ16239;PPP1R90
Species
Homo sapiens
Main target
ENST00000334136
Exons numbers
23-24
Ensembl exons ids
ENSE00003486569;ENSE00003487069
Amplicon start
2494
Amplicon length
61
Assay targets
Transcript Ensembl Id
Bio Type
Ccds
Ref Seq
Chromosome Location
ENST00000334136
Protein coding
CCDS14306
NM_001321225;NM_001321229;NM_006044
Chr.X: 48801995 - 48824982
ENST00000376619
Protein coding
CCDS14306
NM_001321226;NM_001321228
Chr.X: 48802034 - 48824976
ENST00000426196
Protein coding
CCDS14306
NM_001321227
Chr.X: 48802016 - 48824795
ENST00000477528
Retained intron
Chr.X: 48802055 - 48824982
ENST00000486227
Retained intron
Chr.X: 48813353 - 48824976
ENST00000488543
Retained intron
Chr.X: 48819447 - 48824976
ENST00000498808
Processed transcript
Chr.X: 48818313 - 48823579
ENST00000643374
Protein coding
CCDS14306
Chr.X: 48802159 - 48824956
ENST00000643659
Processed transcript
Chr.X: 48802133 - 48824860
ENST00000643934
Protein coding
Chr.X: 48802187 - 48824958
ENST00000644068
Protein coding
CCDS14306
Chr.X: 48802168 - 48824976
ENST00000645643
Nonsense mediated decay
Chr.X: 48816470 - 48824947
ENST00000647398
Nonsense mediated decay
Chr.X: 48802888 - 48824967