Assay name​
HS_SMARCB1_1615950 QuantiNova LNA PCR Assay
Assay specification​
Best coverage assay for SMARCB1
Assay targets 14 transcripts
Assay spans exon
Pre-designed assay for dPCR and qPCR.
Assay in Focus Panel
Assay targets 14 transcripts
Assay spans exon
Pre-designed assay for dPCR and qPCR.
Assay in Focus Panel
Gene symbol​
SMARCB1
Gene aliases​
BAF47;Ini1;INI-1;Snr1;hSNFS;Sfh1p;RDT;PPP1R144;SNF5;SNF5L1
Species​
Homo sapiens
Main target​
ENST00000344921
Exons numbers​
2-3
Ensembl exons ids​
ENSE00001380326;ENSE00000651413
Amplicon start​
383
Amplicon length​
124
Assay targets​
Transcript Ensembl Id
Bio Type
Ccds
Ref Seq
Chromosome Location
ENST00000263121
Protein coding
Chr.22: 23787011 - 23834501
ENST00000344921
Protein coding
CCDS82699
NM_001317946
Chr.22: 23786963 - 23834505
ENST00000407082
Protein coding
Chr.22: 23787017 - 23803401
ENST00000407422
Protein coding
CCDS46671
NM_001007468
Chr.22: 23786931 - 23834540
ENST00000417137
Protein coding
Chr.22: 23787027 - 23816833
ENST00000491967
Retained intron
Chr.22: 23786980 - 23802060
ENST00000634926
Protein coding
Chr.22: 23791811 - 23803322
ENST00000635578
Protein coding
Chr.22: 23791811 - 23803322
ENST00000643421
Retained intron
Chr.22: 23787202 - 23804383
ENST00000644036
Protein coding
CCDS13817
NM_003073
Chr.22: 23786946 - 23838008
ENST00000644462
Nonsense mediated decay
Chr.22: 23791801 - 23834358
ENST00000644619
Nonsense mediated decay
Chr.22: 23787001 - 23816927
ENST00000646723
Retained intron
Chr.22: 23787182 - 23834270
ENST00000646911
Retained intron
Chr.22: 23787258 - 23826248