Assay name​
HS_CLIP1_1625909 QuantiNova LNA PCR Assay
Assay specification​
Best coverage assay for CLIP1
Assay targets 12 transcripts
Assay spans exon
Pre-designed assay for dPCR and qPCR.
Assay in Focus Panel
Assay targets 12 transcripts
Assay spans exon
Pre-designed assay for dPCR and qPCR.
Assay in Focus Panel
Gene symbol​
CLIP1
Gene aliases​
CYLN1;CLIP170;CLIP;CLIP-170;RSN
Species​
Homo sapiens
Main target​
ENST00000536634
Exons numbers​
4-5
Ensembl exons ids​
ENSE00003688269;ENSE00003608614
Amplicon start​
408
Amplicon length​
111
Assay targets​
Transcript Ensembl Id
Bio Type
Ccds
Ref Seq
Chromosome Location
ENST00000302528
Protein coding
CCDS9232
Chr.12: 122271434 - 122380560
ENST00000358808
Protein coding
CCDS9232
NM_002956
Chr.12: 122271434 - 122422569
ENST00000361654
Protein coding
Chr.12: 122271432 - 122422588
ENST00000501271
Retained intron
Chr.12: 122272461 - 122275823
ENST00000536634
Nonsense mediated decay
Chr.12: 122272599 - 122279145
ENST00000537178
Protein coding
CCDS9233
NM_198240
Chr.12: 122272043 - 122422632
ENST00000538120
Retained intron
Chr.12: 122272806 - 122280878
ENST00000540338
Protein coding
CCDS58285
Chr.12: 122272834 - 122380494
ENST00000540539
Processed transcript
Chr.12: 122272668 - 122278472
ENST00000545889
Protein coding
Chr.12: 122271434 - 122364017
ENST00000620786
Protein coding
CCDS58285
NM_001247997
Chr.12: 122271434 - 122422569
ENST00000648993
Protein coding
Chr.12: 122272661 - 122341256