Assay name
HS_SETD2_1657794 QuantiNova LNA PCR Assay
Wet-lab validated
qPCR wet-lab validated
Assay specification
Best coverage assay for SETD2
Best transcript assay for ENST00000409792
Assay targets 5 transcripts
Assay spans exon
Pre-designed assay for dPCR and qPCR. Wet-lab validated for qPCR.
Assay in Focus Panel
Best transcript assay for ENST00000409792
Assay targets 5 transcripts
Assay spans exon
Pre-designed assay for dPCR and qPCR. Wet-lab validated for qPCR.
Assay in Focus Panel
Gene symbol
SETD2
Gene aliases
HYPB;HIF-1;KIAA1732;FLJ23184;KMT3A
Species
Homo sapiens
Main target
ENST00000409792
Exons numbers
9-10
Ensembl exons ids
ENSE00003576223;ENSE00003667442
Amplicon start
5172
Amplicon length
75
Assay targets
Transcript Ensembl Id
Bio Type
Ccds
Ref Seq
Chromosome Location
ENST00000330022
Nonsense mediated decay
Chr.3: 47016436 - 47124250
ENST00000409792
Protein coding
CCDS2749
NM_001349370;NM_014159
Chr.3: 47016689 - 47163967
ENST00000431180
Nonsense mediated decay
Chr.3: 47016429 - 47123787
ENST00000445387
Nonsense mediated decay
Chr.3: 47016689 - 47123535
ENST00000484689
Retained intron
Chr.3: 47088184 - 47098451