Assay name
HS_CAST_1694859 QuantiNova LNA PCR Assay
Assay specification
Best coverage assay for CAST
Assay targets 20 transcripts
Assay spans exon
Pre-designed assay for dPCR and qPCR.
Assay in Focus Panel
Assay targets 20 transcripts
Assay spans exon
Pre-designed assay for dPCR and qPCR.
Assay in Focus Panel
Gene symbol
CAST
Species
Homo sapiens
Main target
ENST00000309190
Exons numbers
24-26
Ensembl exons ids
ENSE00003606065;ENSE00003791651;ENSE00003505750
Amplicon start
1953
Amplicon length
79
Assay targets
Transcript Ensembl Id
Bio Type
Ccds
Ref Seq
Chromosome Location
ENST00000309190
Protein coding
CCDS4082
NM_173060;NM_001330632;NM_001042444;NM_001284212
Chr.5: 96702801 - 96774683
ENST00000325674
Protein coding
Chr.5: 96743627 - 96774679
ENST00000338252
Protein coding
CCDS54883
NM_001190442;NM_001330631;NM_001330634
Chr.5: 96662073 - 96773233
ENST00000341926
Protein coding
Chr.5: 96695785 - 96772814
ENST00000348386
Processed transcript
Chr.5: 96728309 - 96772819
ENST00000395812
Protein coding
CCDS54882
NM_001042440;NM_001330627
Chr.5: 96662237 - 96774683
ENST00000395813
Protein coding
NM_001042443;NM_001330633
Chr.5: 96702789 - 96774679
ENST00000437034
Protein coding
Chr.5: 96741342 - 96774683
ENST00000484552
Nonsense mediated decay
Chr.5: 96743569 - 96773412
ENST00000504465
Protein coding
CCDS75279
NM_001284213
Chr.5: 96702806 - 96772892
ENST00000508579
Protein coding
Chr.5: 96741874 - 96772813
ENST00000508608
Protein coding
NM_001330629;NM_001330628
Chr.5: 96663053 - 96772692
ENST00000508830
Protein coding
NM_001750;NM_001042441;NM_001330626
Chr.5: 96662074 - 96771679
ENST00000509903
Protein coding
CCDS83017
NM_001042445;NM_001042446;NM_001330630
Chr.5: 96702806 - 96771679
ENST00000510098
Nonsense mediated decay
Chr.5: 96757586 - 96779595
ENST00000510500
Protein coding
Chr.5: 96741325 - 96773055
ENST00000510756
Protein coding
CCDS43344
NM_001042442
Chr.5: 96662423 - 96771679
ENST00000511049
Protein coding
Chr.5: 96702800 - 96773570
ENST00000511782
Protein coding
Chr.5: 96702806 - 96772786
ENST00000515663
Protein coding
Chr.5: 96743540 - 96772706