Assay name
HS_CTCF_1811262 QuantiNova LNA PCR Assay
Assay specification
Best coverage assay for CTCF
Assay targets 13 transcripts
Assay spans exon
Pre-designed assay for dPCR and qPCR.
Assay in Focus Panel
Assay targets 13 transcripts
Assay spans exon
Pre-designed assay for dPCR and qPCR.
Assay in Focus Panel
Gene symbol
CTCF
Gene aliases
FAP108;CFAP108
Species
Homo sapiens
Main target
ENST00000644950
Exons numbers
4-5
Ensembl exons ids
ENSE00003824661;ENSE00003827424
Amplicon start
1122
Amplicon length
84
Assay targets
Transcript Ensembl Id
Bio Type
Ccds
Ref Seq
Chromosome Location
ENST00000264010
Protein coding
CCDS10841
NM_006565
Chr.16: 67562526 - 67639177
ENST00000401394
Protein coding
CCDS54029
NM_001191022
Chr.16: 67562573 - 67639168
ENST00000642420
Retained intron
Chr.16: 67626509 - 67639130
ENST00000642819
Protein coding
CCDS10841
Chr.16: 67570773 - 67639162
ENST00000643892
Nonsense mediated decay
Chr.16: 67570778 - 67639164
ENST00000644753
Protein coding
CCDS10841
NM_001363916
Chr.16: 67570741 - 67639175
ENST00000644950
Retained intron
Chr.16: 67620887 - 67639173
ENST00000645306
Protein coding
CCDS86536
Chr.16: 67570774 - 67639163
ENST00000645409
Retained intron
Chr.16: 67614963 - 67639039
ENST00000645699
Protein coding
CCDS10841
Chr.16: 67610590 - 67638966
ENST00000646076
Protein coding
CCDS10841
Chr.16: 67562467 - 67639176
ENST00000646566
Retained intron
Chr.16: 67615309 - 67639162
ENST00000646771
Protein coding
CCDS86536
Chr.16: 67562589 - 67639138