Assay name
HS_ATRIP_1820886 QuantiNova LNA PCR Assay
Wet-lab validated
qPCR wet-lab validated
Assay specification
Best coverage assay for ATRIP
Assay targets 8 transcripts
Assay spans exon
Pre-designed assay for dPCR and qPCR. Wet-lab validated for qPCR.
Assay in Focus Panel
Assay targets 8 transcripts
Assay spans exon
Pre-designed assay for dPCR and qPCR. Wet-lab validated for qPCR.
Assay in Focus Panel
Gene symbol
ATRIP
Gene aliases
FLJ12343;MGC20625;MGC21482;MGC26740
Species
Homo sapiens
Main target
ENST00000346691
Exons numbers
3-4
Ensembl exons ids
ENSE00003819827;ENSE00003824146
Amplicon start
628
Amplicon length
77
Assay targets
Transcript Ensembl Id
Bio Type
Ccds
Ref Seq
Chromosome Location
ENST00000320211
Protein coding
CCDS2768
NM_130384
Chr.3: 48446737 - 48467645
ENST00000346691
Protein coding
CCDS2767
NM_032166
Chr.3: 48446733 - 48465655
ENST00000357105
Protein coding
CCDS59450
NM_001271022
Chr.3: 48446710 - 48465655
ENST00000412052
Protein coding
CCDS59449
NM_001271023
Chr.3: 48447093 - 48465716
ENST00000635082
Nonsense mediated decay
Chr.3: 48446710 - 48460162
ENST00000635099
Protein coding
Chr.3: 48446710 - 48459397
ENST00000635464
Nonsense mediated decay
Chr.3: 48446846 - 48467645
ENST00000639561
Nonsense mediated decay
Chr.3: 48446737 - 48465655