Assay name
HS_OGG1_1869735 QuantiNova LNA PCR Assay
Wet-lab validated
qPCR wet-lab validated
Assay specification
Best coverage assay for OGG1
Best transcript assay for ENST00000344629
Assay targets 12 transcripts
Assay spans exon
Pre-designed assay for dPCR and qPCR. Wet-lab validated for qPCR.
Assay in Focus Panel
Best transcript assay for ENST00000344629
Assay targets 12 transcripts
Assay spans exon
Pre-designed assay for dPCR and qPCR. Wet-lab validated for qPCR.
Assay in Focus Panel
Gene symbol
OGG1
Gene aliases
HMMH;HOGG1;OGH1;MUTM
Species
Homo sapiens
Main target
ENST00000344629
Exons numbers
2-3
Ensembl exons ids
ENSE00001669842;ENSE00001644854
Amplicon start
634
Amplicon length
104
Assay targets
Transcript Ensembl Id
Bio Type
Ccds
Ref Seq
Chromosome Location
ENST00000302003
Protein coding
CCDS2580
NM_016820
Chr.3: 9749944 - 9757407
ENST00000302008
Protein coding
CCDS2579
NM_016828;NM_001354651;NM_001354652
Chr.3: 9750073 - 9766737
ENST00000302036
Protein coding
CCDS2576
NM_016821;NM_001354650
Chr.3: 9749944 - 9766737
ENST00000339511
Protein coding
CCDS43046
NM_016819;NM_001354648
Chr.3: 9749981 - 9757377
ENST00000344629
Protein coding
CCDS2581
NM_002542;NM_001354649
Chr.3: 9749944 - 9757513
ENST00000349503
Protein coding
CCDS2577
NM_016826
Chr.3: 9749944 - 9766668
ENST00000352937
Protein coding
Chr.3: 9751092 - 9766737
ENST00000383826
Protein coding
CCDS2578
NM_016827
Chr.3: 9750087 - 9766112
ENST00000426518
Protein coding
Chr.3: 9751079 - 9788219
ENST00000429146
Nonsense mediated decay
Chr.3: 9750355 - 9756865
ENST00000432857
Retained intron
Chr.3: 9750964 - 9752094
ENST00000449570
Protein coding
CCDS46742
NM_016829
Chr.3: 9750072 - 9766540