Assay name​
HS_CTNNA1_2474742 QuantiNova LNA PCR Assay
Wet-lab validated​
qPCR wet-lab validated
Assay specification​
Best coverage assay for CTNNA1
Best transcript assay for ENST00000521640
Assay targets 23 transcripts
Assay spans exon
Pre-designed assay for dPCR and qPCR. Wet-lab validated for qPCR.
Assay in Focus Panel
Best transcript assay for ENST00000521640
Assay targets 23 transcripts
Assay spans exon
Pre-designed assay for dPCR and qPCR. Wet-lab validated for qPCR.
Assay in Focus Panel
Gene symbol​
CTNNA1
Gene aliases​
CAP102
Species​
Homo sapiens
Main target​
ENST00000521640
Exons numbers​
5-6
Ensembl exons ids​
ENSE00003636139;ENSE00002091092
Amplicon start​
409
Amplicon length​
98
Assay targets​
Transcript Ensembl Id
Bio Type
Ccds
Ref Seq
Chromosome Location
ENST00000302763
Protein coding
CCDS34243
NM_001323982;NM_001323984;NM_001323985;NM_001323986;NM_001290310;NM_001290309;NM_001903;NM_001323983
Chr.5: 138753425 - 138935034
ENST00000517533
Protein coding
Chr.5: 138875433 - 138917819
ENST00000517534
Retained intron
Chr.5: 138827627 - 138887732
ENST00000517656
Protein coding
Chr.5: 138875440 - 138887574
ENST00000518381
Protein coding
Chr.5: 138874038 - 138904387
ENST00000518825
Protein coding
CCDS78064
Chr.5: 138781923 - 138934831
ENST00000519116
Protein coding
Chr.5: 138875464 - 138904437
ENST00000519634
Protein coding
Chr.5: 138875433 - 138887608
ENST00000519768
Protein coding
Chr.5: 138875437 - 138887517
ENST00000520260
Protein coding
Chr.5: 138875266 - 138887552
ENST00000520400
Processed transcript
Chr.5: 138870275 - 138917818
ENST00000520522
Protein coding
Chr.5: 138880195 - 138887608
ENST00000520865
Protein coding
Chr.5: 138875432 - 138887566
ENST00000521640
Protein coding
Chr.5: 138875443 - 138887578
ENST00000521683
Protein coding
Chr.5: 138875440 - 138904375
ENST00000521724
Nonsense mediated decay
Chr.5: 138753421 - 138934213
ENST00000522013
Protein coding
Chr.5: 138875230 - 138917779
ENST00000522052
Nonsense mediated decay
Chr.5: 138875488 - 138917854
ENST00000523275
Nonsense mediated decay
Chr.5: 138824677 - 138887521
ENST00000523298
Protein coding
Chr.5: 138875400 - 138917793
ENST00000523685
Protein coding
Chr.5: 138875433 - 138917847
ENST00000540387
Protein coding
CCDS75315
NM_001323996;NM_001323993;NM_001324005;NM_001323998;NM_001323999;NM_001324007;NM_001324003;NM_001323990;NM_001323991;NM_001324000;NM_001324013;NM_001324009;NM_001324002;NM_001290312;NM_001324001;NM_001323994;NM_001323988;NM_001323997;NM_001323992;NM_001324006;NM_001323995;NM_001324011;NM_001323989;NM_001324008;NM_001324004;NM_001323987;NM_001324012;NM_001324010
Chr.5: 138875653 - 138935028
ENST00000627109
Protein coding
CCDS78064
NM_001290307
Chr.5: 138753418 - 138935033