Assay name
HS_SETD5_2475216 QuantiNova LNA PCR Assay
Wet-lab validated
qPCR wet-lab validated
Assay specification
Best coverage assay for SETD5
Best transcript assay for ENST00000407969
Assay targets 13 transcripts
Assay spans exon
Pre-designed assay for dPCR and qPCR. Wet-lab validated for qPCR.
Assay in Focus Panel
Best transcript assay for ENST00000407969
Assay targets 13 transcripts
Assay spans exon
Pre-designed assay for dPCR and qPCR. Wet-lab validated for qPCR.
Assay in Focus Panel
Gene symbol
SETD5
Gene aliases
FLJ10707;SETD5A
Species
Homo sapiens
Main target
ENST00000407969
Exons numbers
15-16
Ensembl exons ids
ENSE00003617260;ENSE00003531309
Amplicon start
2489
Amplicon length
83
Assay targets
Transcript Ensembl Id
Bio Type
Ccds
Ref Seq
Chromosome Location
ENST00000302463
Protein coding
CCDS74892
NM_001349451;NM_001292043
Chr.3: 9429950 - 9476478
ENST00000399686
Protein coding
Chr.3: 9442167 - 9479240
ENST00000402198
Protein coding
CCDS46741
NM_001080517
Chr.3: 9397719 - 9478154
ENST00000406341
Protein coding
CCDS46741
Chr.3: 9397904 - 9478154
ENST00000407969
Protein coding
Chr.3: 9428925 - 9478154
ENST00000413704
Nonsense mediated decay
Chr.3: 9442170 - 9476154
ENST00000421188
Protein coding
Chr.3: 9447970 - 9473372
ENST00000443339
Nonsense mediated decay
Chr.3: 9397900 - 9464753
ENST00000466242
Retained intron
Chr.3: 9442890 - 9476459
ENST00000476740
Processed transcript
Chr.3: 9448559 - 9464693
ENST00000478961
Processed transcript
Chr.3: 9448475 - 9464810
ENST00000488236
Processed transcript
Chr.3: 9447687 - 9464954
ENST00000493918
Retained intron
Chr.3: 9433993 - 9476459